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HuBMAP

My first Kaggle submission.

1,090th place.

This project applies FastAI.jl's image segmentation to HuBMAP + HPA - Hacking the Human Body.

This code base is using the Julia Language and DrWatson to make a reproducible scientific project named

HuBMAP

To (locally) reproduce this project, do the following:

  1. Download this code base. Notice that raw data are typically not included in the git-history and may need to be downloaded independently.
  2. Open a Julia console and do: 
    julia> using Pkg
julia> Pkg.add("DrWatson") # install globally, for using `quickactivate`
julia> Pkg.activate("path/to/this/project")
julia> Pkg.instantiate()

This will install all necessary packages for you to be able to run the scripts and everything should work out of the box, including correctly finding local paths.