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Add gapseq to bioconda #217

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10 changes: 9 additions & 1 deletion README.md
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# gapseq
_Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks_
[![Documentation Status](https://readthedocs.org/projects/gapseq/badge/?version=latest)](https://gapseq.readthedocs.io/en/latest/?badge=latest)
[![DOI:10.1186/s13059-021-02295-1](https://zenodo.org/badge/DOI/10.1186/s13059-021-02295-1.svg)](https://doi.org/10.1186/s13059-021-02295-1)
[![DOI:10.1186/s13059-021-02295-1](https://zenodo.org/badge/DOI/10.1186/s13059-021-02295-1.svg)](https://doi.org/10.1186/s13059-021-02295-1) [![conda build](https://img.shields.io/conda/v/bioconda/gapseq)](https://anaconda.org/bioconda/gapseq)


_gapseq_ is designed to combine metabolic pathway analysis with metabolic network reconstruction and curation.
Expand All @@ -27,6 +27,14 @@ git clone https://github.com/jotech/gapseq
```
Detailed information on [installation and troubleshooting](https://github.com/jotech/gapseq/blob/master/docs/install.md).

### Using Bioconda
Gapseq has a [bioconda](https://anaconda.org/bioconda/gapseq) package. You must have conda/miniconda/[miniforge](https://github.com/conda-forge/miniforge#install) installed already.
```bash
conda create -c conda-forge -c bioconda -n gapseq gapseq
```

Hint: _When installing with bioconda, the gapseq binary will reside in your PATH, so you will not have to prepend "./" in front of gapseq. (Use "gapseq" instead of "./gapseq")._


## Quickstart
For detailed use cases and full tutorials, see the [documentation](https://gapseq.readthedocs.io/).
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