JUMP-CP Datasets v0.7.1

• Updated entry title

JUMP-CP Datasets v0.7.0

What's Changed

• Auto versioning by @afermg in #121
• Updated notes on the data @shntnu in #120

Full Changelog: v0.6.0...v0.7.0

JUMP-CP Datasets v0.6.0

What's Changed

• Produced batch-corrected profiles for all 3 modalities (compound, CRISPR, ORF) by @johnarevalo @Zitong-Chen-16 using https://github.com/broadinstitute/jump-profiling-recipe/releases/tag/v0.1.0. The URLs to the profiles are here.
• Created JUMP tutorial @afermg in #107
• Added SMILES to compounds.csv.gz by @srijitseal in #103
• Created Spring portal by https://github.com/spring-discovery in #54
• Added Terra-specific files + use anonymous flag when reading images from S3 by @deflaux in #55
• Specified CellProfiler versions @bethac07 in #31
• Reported stats on number and size of images files by @shntnu in #43
• Specified which compounds were nominated by which source by @shntnu in #106

Full Changelog: v0.5.0...v0.6.0

JUMP-CP Datasets v0.5.0

What's Changed

• Add one new source (source_7) #50 #52
• Update ORF metadata by adding entries from pilot datasets #51

Full Changelog: v0.4.2...v0.5.0

JUMP-CP Datasets v0.4.2

What's Changed

• Create .zenodo.json to fix author list in #47

Full Changelog: v0.4.1...v0.4.2

JUMP-CP Datasets v0.4.1

What's Changed

• Adjusted datasets described
• DOI integration with Zenodo enabled

Full Changelog: v0.4.0...v0.4.1

JUMP-CP Datasets v0.4.0

What's Changed

• Added one new source: source_13 (CRISPR dataset) #39
• Dataset statistics (number of wells, sites, cells) added #41

Full Changelog: v0.3.0...v0.4.0

JUMP-CP Datasets v0.3.0

What's Changed

• Added two new sources: source_1 and source_9 #29 #30
• Bortezomib-only plates have been moved to a separate dataset (cpg0024-bortezomib) #36 #37

Full Changelog: v0.2.0...v0.3.0

JUMP-CP Datasets v0.2.0

What's Changed

• Added ORF metadata in #14. Later changed the Metadata_pert_type such that it is one of negcon/poscon/trt and eGFP is poscon in #26.
• Updated source_6 and source_8 because some wells and plates were incorrectly labeled in #15
• Added microscope metadata information in #21 and #25
• Added two new sources: source_2 and source_11 in #27
• Updated the sample notebook in #27
• LoadData CSVs are now available #27

New Contributors

• @alxndrkalinin made their first contribution in #25
• @bethac07 made their first contribution in #21

Full Changelog: v0.1.0...v0.2.0

JUMP-CP Datasets v0.1.0

Hello world!