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Add module nanofilt (#5290) #4

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Add module nanofilt (#5290)

Add module nanofilt (#5290) #4

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Job Run time
pytest-changes
8s
editorconfig
13s
nf-test-changes
10s
pre-commit
14s
prettier
47s
pytest (deepvariant, docker)
1s
pytest (deepvariant, singularity)
1s
pytest (gatk4/cnnscorevariants, docker)
1s
pytest (gatk4/cnnscorevariants, singularity)
1s
pytest (gatk4/determinegermlinecontigploidy, docker)
1s
pytest (gatk4/germlinecnvcaller, docker)
1s
pytest (gatk4/germlinecnvcaller, singularity)
1s
pytest (gatk4/postprocessgermlinecnvcalls, docker)
1s
pytest (gatk4/postprocessgermlinecnvcalls, singularity)
1s
pytest (shapeit5/ligate, conda)
1s
pytest (shapeit5/ligate, docker)
1s
pytest (shapeit5/ligate, singularity)
1s
pytest (subworkflows/vcf_phase_shapeit5, conda)
1s
pytest (subworkflows/vcf_phase_shapeit5, docker)
1s
pytest (subworkflows/vcf_phase_shapeit5, singularity)
1s
nf-core-lint (deepvariant)
1s
nf-core-lint (gatk4/cnnscorevariants)
1s
nf-core-lint (gatk4/determinegermlinecontigploidy)
1s
nf-core-lint (gatk4/germlinecnvcaller)
1s
nf-core-lint (gatk4/postprocessgermlinecnvcalls)
1s
nf-core-lint (shapeit5/ligate)
1s
nf-core-lint (subworkflows/vcf_phase_shapeit5)
1s
nf-core-lint (subworkflows/fastq_align_mapad)
1s
nf-core-lint (subworkflows/vcf_impute_glimpse)
1s
nf-core-lint (subworkflows/fastq_align_dna)
1s
nf-core-lint (subworkflows/fastq_fastqc_umitools_fastp)
1s
nf-core-lint (dragmap/align)
1s
nf-core-lint (liftoff)
1s
nf-core-lint (kaiju/mergeoutputs)
1s
nf-core-lint (bedtools/sort)
1s
nf-core-lint (wittyer)
1s
nf-core-lint (seqfu/stats)
1s
nf-core-lint (kraken2/kraken2)
1s
nf-core-lint (krakentools/extractkrakenreads)
1s
nf-core-lint (kallistobustools/count)
1s
nf-core-lint (picard/addorreplacereadgroups)
1s
nf-core-lint (lofreq/viterbi)
1s
nf-core-lint (bases2fastq)
1s
nf-core-lint (ensemblvep/vep)
1s
nf-core-lint (bwamem2/mem)
1s
nf-core-lint (tcoffee/tcs)
1s
nf-core-lint (tcoffee/align)
1s
nf-core-lint (svtyper/svtypersso)
1s
nf-core-lint (cellranger/count)
1s
nf-core-lint (gatk4/addorreplacereadgroups)
1s
nf-core-lint (gt/gff3validator)
1s
nf-core-lint (bamstats/generalstats)
1s
nf-core-lint (scimap/spatiallda)
1s
nf-core-lint (bakta/bakta)
1s
nf-core-lint (glimpse/phase)
1s
nf-core-lint (glimpse/chunk)
1s
nf-test (subworkflows/fastq_align_mapad, conda)
1s
nf-core-lint (glimpse/sample)
1s
nf-test (subworkflows/fastq_align_mapad, docker)
1s
nf-core-lint (glimpse/concordance)
1s
nf-test (subworkflows/fastq_align_mapad, singularity)
1s
nf-core-lint (glimpse/ligate)
1s
nf-core-lint (molkartgarage/clahe)
1s
nf-test (subworkflows/vcf_impute_glimpse, conda)
1s
nf-core-lint (igvreports)
1s
nf-test (subworkflows/vcf_impute_glimpse, docker)
1s
nf-core-lint (leviosam2/index)
1s
nf-test (subworkflows/vcf_impute_glimpse, singularity)
1s
nf-core-lint (gtfsort)
1s
nf-test (subworkflows/fastq_align_dna, conda)
1s
nf-core-lint (nanofilt)
1s
nf-test (subworkflows/fastq_align_dna, docker)
1s
nf-test (subworkflows/fastq_align_dna, singularity)
1s
nf-test (subworkflows/fastq_fastqc_umitools_fastp, conda)
1s
nf-test (subworkflows/fastq_fastqc_umitools_fastp, docker)
1s
nf-test (subworkflows/fastq_fastqc_umitools_fastp, singularity)
1s
nf-test (dragmap/align, conda)
1s
nf-test (dragmap/align, docker)
1s
nf-test (dragmap/align, singularity)
1s
nf-test (liftoff, conda)
1s
nf-test (liftoff, docker)
1s
nf-test (liftoff, singularity)
1s
nf-test (kaiju/mergeoutputs, conda)
1s
nf-test (kaiju/mergeoutputs, docker)
1s
nf-test (kaiju/mergeoutputs, singularity)
1s
nf-test (bedtools/sort, conda)
1s
nf-test (bedtools/sort, docker)
1s
nf-test (bedtools/sort, singularity)
1s
nf-test (wittyer, docker)
1s
nf-test (wittyer, singularity)
1s
nf-test (seqfu/stats, conda)
1s
nf-test (seqfu/stats, docker)
1s
nf-test (seqfu/stats, singularity)
1s
nf-test (kraken2/kraken2, conda)
1s
nf-test (kraken2/kraken2, docker)
1s
nf-test (kraken2/kraken2, singularity)
1s
nf-test (krakentools/extractkrakenreads, conda)
1s
nf-test (krakentools/extractkrakenreads, docker)
1s
nf-test (krakentools/extractkrakenreads, singularity)
1s
nf-test (kallistobustools/count, conda)
1s
nf-test (kallistobustools/count, docker)
1s
nf-test (kallistobustools/count, singularity)
1s
nf-test (picard/addorreplacereadgroups, conda)
1s
nf-test (picard/addorreplacereadgroups, docker)
1s
nf-test (picard/addorreplacereadgroups, singularity)
1s
nf-test (lofreq/viterbi, conda)
1s
nf-test (lofreq/viterbi, docker)
1s
nf-test (lofreq/viterbi, singularity)
1s
nf-test (bases2fastq, docker)
1s
nf-test (ensemblvep/vep, docker)
1s
nf-test (ensemblvep/vep, singularity)
1s
nf-test (bwamem2/mem, conda)
1s
nf-test (bwamem2/mem, docker)
1s
nf-test (bwamem2/mem, singularity)
1s
nf-test (tcoffee/tcs, conda)
1s
nf-test (tcoffee/tcs, docker)
1s
nf-test (tcoffee/tcs, singularity)
1s
nf-test (tcoffee/align, conda)
1s
nf-test (tcoffee/align, docker)
1s
nf-test (tcoffee/align, singularity)
1s
nf-test (svtyper/svtypersso, conda)
1s
nf-test (svtyper/svtypersso, docker)
1s
nf-test (svtyper/svtypersso, singularity)
1s
nf-test (cellranger/count, docker)
1s
nf-test (cellranger/count, singularity)
1s
nf-test (gatk4/addorreplacereadgroups, conda)
1s
nf-test (gatk4/addorreplacereadgroups, docker)
1s
nf-test (gatk4/addorreplacereadgroups, singularity)
1s
nf-test (gt/gff3validator, conda)
1s
nf-test (gt/gff3validator, docker)
1s
nf-test (gt/gff3validator, singularity)
1s
nf-test (bamstats/generalstats, conda)
1s
nf-test (bamstats/generalstats, docker)
1s
nf-test (bamstats/generalstats, singularity)
1s
nf-test (scimap/spatiallda, docker)
1s
nf-test (scimap/spatiallda, singularity)
1s
nf-test (bakta/bakta, docker)
1s
nf-test (bakta/bakta, singularity)
1s
nf-test (glimpse/phase, conda)
1s
nf-test (glimpse/phase, docker)
1s
nf-test (glimpse/phase, singularity)
1s
nf-test (glimpse/chunk, conda)
1s
nf-test (glimpse/chunk, docker)
1s
nf-test (glimpse/chunk, singularity)
1s
nf-test (glimpse/sample, conda)
1s
nf-test (glimpse/sample, docker)
1s
nf-test (glimpse/sample, singularity)
1s
nf-test (glimpse/concordance, conda)
1s
nf-test (glimpse/concordance, docker)
1s
nf-test (glimpse/concordance, singularity)
1s
nf-test (glimpse/ligate, conda)
1s
nf-test (glimpse/ligate, docker)
1s
nf-test (glimpse/ligate, singularity)
1s
nf-test (molkartgarage/clahe, docker)
1s
nf-test (molkartgarage/clahe, singularity)
1s
nf-test (igvreports, conda)
1s
nf-test (igvreports, docker)
1s
nf-test (igvreports, singularity)
1s
nf-test (leviosam2/index, conda)
1s
nf-test (leviosam2/index, docker)
1s
nf-test (leviosam2/index, singularity)
1s
nf-test (gtfsort, conda)
1s
nf-test (gtfsort, docker)
1s
nf-test (gtfsort, singularity)
1s
nf-test (nanofilt, conda)
1s
nf-test (nanofilt, docker)
1s
nf-test (nanofilt, singularity)
1s
confirm-pass
1s
4m 15s