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@privefl
privefl committed Mar 24, 2017
1 parent e12c629 commit 1ff7708
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2 changes: 1 addition & 1 deletion R/bigmemory.R
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#' @useDynLib bigmemory
#' @useDynLib bigmemory, .registration = TRUE
#' @import methods bigmemory.sri Rcpp
#' @importFrom utils head tail

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154 changes: 154 additions & 0 deletions src/register.c
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#include <R.h>
#include <Rinternals.h>
#include <stdlib.h> // for NULL
#include <R_ext/Rdynload.h>

/* FIXME:
Check these declarations against the C/Fortran source code.
*/

/* .Call calls */
extern SEXP bigmemory_CAttachFileBackedBigMatrix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_CAttachSharedBigMatrix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_CCleanIndices(SEXP, SEXP);
extern SEXP bigmemory_CCountLines(SEXP);
extern SEXP bigmemory_CDeepCopy(SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_CGetNcol(SEXP);
extern SEXP bigmemory_CGetNrow(SEXP);
extern SEXP bigmemory_CGetType(SEXP);
extern SEXP bigmemory_CIsSubMatrix(SEXP);
extern SEXP bigmemory_CreateFileBackedBigMatrix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_CreateLocalMatrix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_CreateSharedMatrix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_DirName(SEXP);
extern SEXP bigmemory_FileName(SEXP);
extern SEXP bigmemory_Flush(SEXP);
extern SEXP bigmemory_GetColOffset(SEXP);
extern SEXP bigmemory_GetColumnNamesBM(SEXP);
extern SEXP bigmemory_GetIndexColNames(SEXP, SEXP);
extern SEXP bigmemory_GetIndexRowNames(SEXP, SEXP);
extern SEXP bigmemory_GetIndivMatrixElements(SEXP, SEXP, SEXP);
extern SEXP bigmemory_GetIndivVectorMatrixElements(SEXP, SEXP);
extern SEXP bigmemory_GetMatrixAll(SEXP);
extern SEXP bigmemory_GetMatrixCols(SEXP, SEXP);
extern SEXP bigmemory_GetMatrixElements(SEXP, SEXP, SEXP);
extern SEXP bigmemory_GetMatrixRows(SEXP, SEXP);
extern SEXP bigmemory_GetMatrixSize(SEXP);
extern SEXP bigmemory_GetRowNamesBM(SEXP);
extern SEXP bigmemory_GetRowOffset(SEXP);
extern SEXP bigmemory_GetTotalColumns(SEXP);
extern SEXP bigmemory_GetTotalRows(SEXP);
extern SEXP bigmemory_GetTypeString(SEXP);
extern SEXP bigmemory_HasRowColNames(SEXP);
extern SEXP bigmemory_IsFileBackedBigMatrix(SEXP);
extern SEXP bigmemory_isnil(SEXP);
extern SEXP bigmemory_IsReadOnly(SEXP);
extern SEXP bigmemory_IsSeparated(SEXP);
extern SEXP bigmemory_IsShared(SEXP);
extern SEXP bigmemory_IsSharedMemoryBigMatrix(SEXP);
extern SEXP bigmemory_MWhichBigMatrix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_MWhichRIntMatrix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_MWhichRNumericMatrix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_OrderBigMatrix(SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_OrderBigMatrixCols(SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_OrderRIntMatrix(SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_OrderRIntMatrixCols(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_OrderRNumericMatrix(SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_OrderRNumericMatrixCols(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_ReadMatrix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_ReorderBigMatrix(SEXP, SEXP);
extern SEXP bigmemory_ReorderBigMatrixCols(SEXP, SEXP);
extern SEXP bigmemory_ReorderRIntMatrix(SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_ReorderRIntMatrixCols(SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_ReorderRNumericMatrix(SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_ReorderRNumericMatrixCols(SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_ReorderRRawMatrixCols(SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_SetColumnNames(SEXP, SEXP);
extern SEXP bigmemory_SetColumnOffsetInfo(SEXP, SEXP, SEXP);
extern SEXP bigmemory_SetIndivMatrixElements(SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_SetIndivVectorMatrixElements(SEXP, SEXP, SEXP);
extern SEXP bigmemory_SetMatrixAll(SEXP, SEXP);
extern SEXP bigmemory_SetMatrixCols(SEXP, SEXP, SEXP);
extern SEXP bigmemory_SetMatrixElements(SEXP, SEXP, SEXP, SEXP);
extern SEXP bigmemory_SetMatrixRows(SEXP, SEXP, SEXP);
extern SEXP bigmemory_SetRowNames(SEXP, SEXP);
extern SEXP bigmemory_SetRowOffsetInfo(SEXP, SEXP, SEXP);
extern SEXP bigmemory_SharedName(SEXP);
extern SEXP bigmemory_WriteMatrix(SEXP, SEXP, SEXP, SEXP, SEXP);

static const R_CallMethodDef CallEntries[] = {
{"bigmemory_CAttachFileBackedBigMatrix", (DL_FUNC) &bigmemory_CAttachFileBackedBigMatrix, 9},
{"bigmemory_CAttachSharedBigMatrix", (DL_FUNC) &bigmemory_CAttachSharedBigMatrix, 8},
{"bigmemory_CCleanIndices", (DL_FUNC) &bigmemory_CCleanIndices, 2},
{"bigmemory_CCountLines", (DL_FUNC) &bigmemory_CCountLines, 1},
{"bigmemory_CDeepCopy", (DL_FUNC) &bigmemory_CDeepCopy, 5},
{"bigmemory_CGetNcol", (DL_FUNC) &bigmemory_CGetNcol, 1},
{"bigmemory_CGetNrow", (DL_FUNC) &bigmemory_CGetNrow, 1},
{"bigmemory_CGetType", (DL_FUNC) &bigmemory_CGetType, 1},
{"bigmemory_CIsSubMatrix", (DL_FUNC) &bigmemory_CIsSubMatrix, 1},
{"bigmemory_CreateFileBackedBigMatrix", (DL_FUNC) &bigmemory_CreateFileBackedBigMatrix, 9},
{"bigmemory_CreateLocalMatrix", (DL_FUNC) &bigmemory_CreateLocalMatrix, 7},
{"bigmemory_CreateSharedMatrix", (DL_FUNC) &bigmemory_CreateSharedMatrix, 7},
{"bigmemory_DirName", (DL_FUNC) &bigmemory_DirName, 1},
{"bigmemory_FileName", (DL_FUNC) &bigmemory_FileName, 1},
{"bigmemory_Flush", (DL_FUNC) &bigmemory_Flush, 1},
{"bigmemory_GetColOffset", (DL_FUNC) &bigmemory_GetColOffset, 1},
{"bigmemory_GetColumnNamesBM", (DL_FUNC) &bigmemory_GetColumnNamesBM, 1},
{"bigmemory_GetIndexColNames", (DL_FUNC) &bigmemory_GetIndexColNames, 2},
{"bigmemory_GetIndexRowNames", (DL_FUNC) &bigmemory_GetIndexRowNames, 2},
{"bigmemory_GetIndivMatrixElements", (DL_FUNC) &bigmemory_GetIndivMatrixElements, 3},
{"bigmemory_GetIndivVectorMatrixElements", (DL_FUNC) &bigmemory_GetIndivVectorMatrixElements, 2},
{"bigmemory_GetMatrixAll", (DL_FUNC) &bigmemory_GetMatrixAll, 1},
{"bigmemory_GetMatrixCols", (DL_FUNC) &bigmemory_GetMatrixCols, 2},
{"bigmemory_GetMatrixElements", (DL_FUNC) &bigmemory_GetMatrixElements, 3},
{"bigmemory_GetMatrixRows", (DL_FUNC) &bigmemory_GetMatrixRows, 2},
{"bigmemory_GetMatrixSize", (DL_FUNC) &bigmemory_GetMatrixSize, 1},
{"bigmemory_GetRowNamesBM", (DL_FUNC) &bigmemory_GetRowNamesBM, 1},
{"bigmemory_GetRowOffset", (DL_FUNC) &bigmemory_GetRowOffset, 1},
{"bigmemory_GetTotalColumns", (DL_FUNC) &bigmemory_GetTotalColumns, 1},
{"bigmemory_GetTotalRows", (DL_FUNC) &bigmemory_GetTotalRows, 1},
{"bigmemory_GetTypeString", (DL_FUNC) &bigmemory_GetTypeString, 1},
{"bigmemory_HasRowColNames", (DL_FUNC) &bigmemory_HasRowColNames, 1},
{"bigmemory_IsFileBackedBigMatrix", (DL_FUNC) &bigmemory_IsFileBackedBigMatrix, 1},
{"bigmemory_isnil", (DL_FUNC) &bigmemory_isnil, 1},
{"bigmemory_IsReadOnly", (DL_FUNC) &bigmemory_IsReadOnly, 1},
{"bigmemory_IsSeparated", (DL_FUNC) &bigmemory_IsSeparated, 1},
{"bigmemory_IsShared", (DL_FUNC) &bigmemory_IsShared, 1},
{"bigmemory_IsSharedMemoryBigMatrix", (DL_FUNC) &bigmemory_IsSharedMemoryBigMatrix, 1},
{"bigmemory_MWhichBigMatrix", (DL_FUNC) &bigmemory_MWhichBigMatrix, 7},
{"bigmemory_MWhichRIntMatrix", (DL_FUNC) &bigmemory_MWhichRIntMatrix, 8},
{"bigmemory_MWhichRNumericMatrix", (DL_FUNC) &bigmemory_MWhichRNumericMatrix, 8},
{"bigmemory_OrderBigMatrix", (DL_FUNC) &bigmemory_OrderBigMatrix, 4},
{"bigmemory_OrderBigMatrixCols", (DL_FUNC) &bigmemory_OrderBigMatrixCols, 4},
{"bigmemory_OrderRIntMatrix", (DL_FUNC) &bigmemory_OrderRIntMatrix, 5},
{"bigmemory_OrderRIntMatrixCols", (DL_FUNC) &bigmemory_OrderRIntMatrixCols, 6},
{"bigmemory_OrderRNumericMatrix", (DL_FUNC) &bigmemory_OrderRNumericMatrix, 5},
{"bigmemory_OrderRNumericMatrixCols", (DL_FUNC) &bigmemory_OrderRNumericMatrixCols, 6},
{"bigmemory_ReadMatrix", (DL_FUNC) &bigmemory_ReadMatrix, 8},
{"bigmemory_ReorderBigMatrix", (DL_FUNC) &bigmemory_ReorderBigMatrix, 2},
{"bigmemory_ReorderBigMatrixCols", (DL_FUNC) &bigmemory_ReorderBigMatrixCols, 2},
{"bigmemory_ReorderRIntMatrix", (DL_FUNC) &bigmemory_ReorderRIntMatrix, 4},
{"bigmemory_ReorderRIntMatrixCols", (DL_FUNC) &bigmemory_ReorderRIntMatrixCols, 4},
{"bigmemory_ReorderRNumericMatrix", (DL_FUNC) &bigmemory_ReorderRNumericMatrix, 4},
{"bigmemory_ReorderRNumericMatrixCols", (DL_FUNC) &bigmemory_ReorderRNumericMatrixCols, 4},
{"bigmemory_ReorderRRawMatrixCols", (DL_FUNC) &bigmemory_ReorderRRawMatrixCols, 4},
{"bigmemory_SetColumnNames", (DL_FUNC) &bigmemory_SetColumnNames, 2},
{"bigmemory_SetColumnOffsetInfo", (DL_FUNC) &bigmemory_SetColumnOffsetInfo, 3},
{"bigmemory_SetIndivMatrixElements", (DL_FUNC) &bigmemory_SetIndivMatrixElements, 4},
{"bigmemory_SetIndivVectorMatrixElements", (DL_FUNC) &bigmemory_SetIndivVectorMatrixElements, 3},
{"bigmemory_SetMatrixAll", (DL_FUNC) &bigmemory_SetMatrixAll, 2},
{"bigmemory_SetMatrixCols", (DL_FUNC) &bigmemory_SetMatrixCols, 3},
{"bigmemory_SetMatrixElements", (DL_FUNC) &bigmemory_SetMatrixElements, 4},
{"bigmemory_SetMatrixRows", (DL_FUNC) &bigmemory_SetMatrixRows, 3},
{"bigmemory_SetRowNames", (DL_FUNC) &bigmemory_SetRowNames, 2},
{"bigmemory_SetRowOffsetInfo", (DL_FUNC) &bigmemory_SetRowOffsetInfo, 3},
{"bigmemory_SharedName", (DL_FUNC) &bigmemory_SharedName, 1},
{"bigmemory_WriteMatrix", (DL_FUNC) &bigmemory_WriteMatrix, 5},
{NULL, NULL, 0}
};

void R_init_bigmemory(DllInfo *dll)
{
R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);
R_useDynamicSymbols(dll, FALSE);
}

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