merge master #99
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build | |
| on: [push, pull_request] | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| env: | |
| PREFIX: "/usr/local/" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macOS-11] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Build wheels | |
| uses: pypa/[email protected] | |
| env: | |
| CIBW_PROJECT_REQUIRES_PYTHON: ">=3.10" # >=3.8 <3.12 | |
| CIBW_SKIP: "*-win32 *-manylinux_i686 pp* *musl* " # cp311-macosx* | |
| CIBW_ARCHS_MACOS: "x86_64 arm64" | |
| CIBW_ARCHS_LINUX: "auto" | |
| CIBW_BEFORE_ALL_MACOS: bash ci/osx-deps | |
| CIBW_BEFORE_ALL_LINUX: bash ci/manylinux-deps | |
| CIBW_BEFORE_BUILD_MACOS: | | |
| ln -s /Library/Frameworks/Python.framework/Versions/3.11/include/python3.11/cpython/longintrepr.h /Library/Frameworks/Python.framework/Versions/3.11/include/python3.11 | |
| pip install -r requirements.txt | |
| CIBW_BEFORE_BUILD_LINUX: pip install -r requirements.txt | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: delocate-wheel --require-archs x86_64 -w {dest_dir} -v {wheel} | |
| CIBW_TEST_SKIP: "*-macosx_arm64" | |
| CIBW_TEST_REQUIRES: cython click>=8.0 numpy scipy pandas pysam>=0.22.0 networkx>=2.4 scikit-learn>=0.22 sortedcontainers lightgbm | |
| CIBW_TEST_COMMAND: dysgu test --verbose | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: ./wheelhouse/*.whl |