updated build process to pyproject.toml #149
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build | |
| on: [push, pull_request] | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| env: | |
| PREFIX: "/usr/local/" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macOS-13] | |
| #os: [ubuntu-latest, macOS-11] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install project dependencies | |
| run: which python; python -m pip install -r requirements.txt | |
| - name: Build wheels | |
| uses: pypa/[email protected] | |
| env: | |
| CIBW_PROJECT_REQUIRES_PYTHON: ">=3.10" # >=3.8 <3.12 | |
| CIBW_SKIP: "*-win32 *-manylinux_i686 pp* *musl* " # cp311-macosx* | |
| CIBW_ARCHS_MACOS: "x86_64 arm64" | |
| CIBW_ARCHS_LINUX: "auto" | |
| CIBW_BEFORE_ALL_MACOS: bash ci/osx-deps | |
| CIBW_BEFORE_ALL_LINUX: bash ci/manylinux-deps | |
| CIBW_BEFORE_BUILD_MACOS: | | |
| ln -s /Library/Frameworks/Python.framework/Versions/3.11/include/python3.11/cpython/longintrepr.h /Library/Frameworks/Python.framework/Versions/3.11/include/python3.11 | |
| which python3 | |
| python3 -m pip install -r requirements.txt | |
| CIBW_BEFORE_BUILD_LINUX: pip install -r requirements.txt | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: delocate-wheel --require-archs x86_64 -w {dest_dir} -v {wheel} --require-target-macos-version 13.0 | |
| CIBW_TEST_SKIP: "*-macosx_arm64" | |
| CIBW_TEST_REQUIRES: cython click>=8.0 numpy scipy pandas pysam>=0.22.0 networkx>=2.4 scikit-learn>=0.22 sortedcontainers lightgbm | |
| CIBW_TEST_COMMAND: dysgu test --verbose | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: wheelhouse-${{ matrix.os }}-${{ github.run_id }} | |
| path: ./wheelhouse/*.whl |