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Dysgu dev #112

Merged
merged 11 commits into from
Oct 24, 2024
Merged

Dysgu dev #112

merged 11 commits into from
Oct 24, 2024

Commits on Sep 12, 2024

  1. dysgu_dev <- master (#108) 

    * correct usage of update_filter_value in filter_normals

It seems like at some point the usage of update_filter_value changed, because in several spots, it is missing the sample_name argument. This breaks `dysgu filter --keep-all`.

* Update main.yml

* Update main.yml

* Update requirements.txt

* updated build process to pyproject.toml (#103)

* v1.6.6 updated README

* Update main.yml

* Added pyproject.toml

* Updated pyproject.toml and setup.py

* Update pyproject.toml

---------

Co-authored-by: Dr. K. D. Murray <[email protected]>
    @kcleal @kdm9
    kcleal and kdm9 authored Sep 12, 2024
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Commits on Oct 23, 2024

  1. Better recall+precision for long-reads. Improved merging pipeline. Fa… 

    …ster runtime. Code refactoring. WIP # [skip ci]
    @kcleal
    kcleal committed Oct 23, 2024
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Commits on Oct 24, 2024

  1. Fixed issues with overriding presets. --mode option updated # [skip ci]

    @kcleal
    kcleal committed Oct 24, 2024
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  2. Fixed issues with overriding presets. --mode option updated to suppor… 

    …t r10 and revio, new presets available. --no-gt flat removed # [skip ci]
    @kcleal
    kcleal committed Oct 24, 2024
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  3. Merge branch 'master' into dysgu_dev

    @kcleal
    kcleal authored Oct 24, 2024
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  4. Fixed CLI issues for tests # [skip ci]

    @kcleal
    kcleal committed Oct 24, 2024
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  5. Merge remote-tracking branch 'origin/dysgu_dev' into dysgu_dev

    @kcleal
    kcleal committed Oct 24, 2024
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  6. Fixed API issue

    @kcleal
    kcleal committed Oct 24, 2024
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  7. v1.7.0

    @kcleal
    kcleal committed Oct 24, 2024
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  8. added deprecated warning for mode

    @kcleal
    kcleal committed Oct 24, 2024
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  9. Merge branch 'master' into dysgu_dev

    @kcleal
    kcleal authored Oct 24, 2024
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