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feat: option to group in-memory nodes
Signed-off-by: Simon Brugman <[email protected]>
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Original file line number | Diff line number | Diff line change |
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from __future__ import annotations | ||
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from collections import defaultdict | ||
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from kedro.io import DataCatalog, MemoryDataSet | ||
from kedro.pipeline.node import Node | ||
from kedro.pipeline.pipeline import Pipeline | ||
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def _is_memory_dataset(catalog, dataset_name: str) -> bool: | ||
if dataset_name == "parameters" or dataset_name.startswith("params:"): | ||
return False | ||
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dataset = catalog._data_sets.get(dataset_name, None) | ||
return dataset is not None and isinstance(dataset, MemoryDataSet) | ||
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def get_memory_datasets(catalog: DataCatalog, pipeline: Pipeline) -> set[str]: | ||
"""Gather all datasets in the pipeline that are of type MemoryDataSet, excluding 'parameters'.""" | ||
return { | ||
dataset_name | ||
for dataset_name in pipeline.data_sets() | ||
if _is_memory_dataset(catalog, dataset_name) | ||
} | ||
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def node_sequence_name(node_sequence: list[Node]) -> str: | ||
return "_".join([node.name for node in node_sequence]) | ||
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def group_memory_nodes(catalog: DataCatalog, pipeline: Pipeline): | ||
# get all memory datasets in the pipeline | ||
ds = get_memory_datasets(catalog, pipeline) | ||
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# Node sequences | ||
node_sequences = [] | ||
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# Mapping from dataset name -> node sequence index | ||
sequence_map = {} | ||
for node in pipeline.nodes: | ||
if all(o not in ds for o in node.inputs + node.outputs): | ||
# standalone node | ||
node_sequences.append([node]) | ||
else: | ||
if all(i not in ds for i in node.inputs): | ||
# start of a sequence; create a new sequence and store the id | ||
node_sequences.append([node]) | ||
sequence_id = len(node_sequences) - 1 | ||
else: | ||
# continuation of a sequence; retrieve sequence_id | ||
sequence_id = None | ||
for i in node.inputs: | ||
if i in ds: | ||
assert sequence_id is None or sequence_id == sequence_map[i] | ||
sequence_id = sequence_map[i] | ||
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# Append to map | ||
node_sequences[sequence_id].append(node) | ||
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# map outputs to sequence_id | ||
for o in node.outputs: | ||
if o in ds: | ||
sequence_map[o] = sequence_id | ||
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# Named node sequences | ||
nodes = { | ||
node_sequence_name(node_sequence): node_sequence | ||
for node_sequence in node_sequences | ||
} | ||
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# Inverted mapping | ||
node_mapping = { | ||
node.name: sequence_name | ||
for sequence_name, node_sequence in nodes.items() | ||
for node in node_sequence | ||
} | ||
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# Grouped dependencies | ||
dependencies = defaultdict(list) | ||
for node, parent_nodes in pipeline.node_dependencies.items(): | ||
for parent in parent_nodes: | ||
parent_name = node_mapping[parent.name] | ||
node_name = node_mapping[node.name] | ||
if parent_name != node_name and ( | ||
parent_name not in dependencies | ||
or node_name not in dependencies[parent_name] | ||
): | ||
dependencies[parent_name].append(node_name) | ||
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return nodes, dependencies |
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,128 @@ | ||
from __future__ import annotations | ||
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from typing import Any | ||
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import pytest | ||
from kedro.io import AbstractDataSet, DataCatalog, MemoryDataSet | ||
from kedro.pipeline import node | ||
from kedro.pipeline.modular_pipeline import pipeline as modular_pipeline | ||
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from kedro_airflow.grouping import _is_memory_dataset, group_memory_nodes | ||
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class TestDataSet(AbstractDataSet): | ||
def _save(self, data) -> None: | ||
pass | ||
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def _describe(self) -> dict[str, Any]: | ||
return {} | ||
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def _load(self): | ||
return [] | ||
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@pytest.mark.parametrize( | ||
"memory_nodes,expected_nodes,expected_dependencies", | ||
[ | ||
( | ||
["ds3", "ds6"], | ||
[["f1"], ["f2", "f3", "f4", "f6", "f7"], ["f5"]], | ||
{"f1": ["f2_f3_f4_f6_f7"], "f2_f3_f4_f6_f7": ["f5"]}, | ||
), | ||
( | ||
["ds3"], | ||
[["f1"], ["f2", "f3", "f4", "f7"], ["f5"], ["f6"]], | ||
{"f1": ["f2_f3_f4_f7"], "f2_f3_f4_f7": ["f5", "f6"]}, | ||
), | ||
( | ||
[], | ||
[["f1"], ["f2"], ["f3"], ["f4"], ["f5"], ["f6"], ["f7"]], | ||
{"f1": ["f2"], "f2": ["f3", "f4", "f5", "f7"], "f4": ["f6", "f7"]}, | ||
), | ||
], | ||
) | ||
def test_group_memory_nodes( | ||
memory_nodes: list[str], | ||
expected_nodes: list[list[str]], | ||
expected_dependencies: dict[str, list[str]], | ||
): | ||
"""Check the grouping of memory nodes.""" | ||
nodes = [f"ds{i}" for i in range(1, 10)] | ||
assert all(node_name in nodes for node_name in memory_nodes) | ||
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mock_catalog = DataCatalog() | ||
for dataset_name in nodes: | ||
if dataset_name in memory_nodes: | ||
dataset = MemoryDataSet() | ||
else: | ||
dataset = TestDataSet() | ||
mock_catalog.add(dataset_name, dataset) | ||
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def identity_one_to_one(x): | ||
return x | ||
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mock_pipeline = modular_pipeline( | ||
[ | ||
node( | ||
func=identity_one_to_one, | ||
inputs="ds1", | ||
outputs="ds2", | ||
name="f1", | ||
), | ||
node( | ||
func=lambda x: (x, x), | ||
inputs="ds2", | ||
outputs=["ds3", "ds4"], | ||
name="f2", | ||
), | ||
node( | ||
func=identity_one_to_one, | ||
inputs="ds3", | ||
outputs="ds5", | ||
name="f3", | ||
), | ||
node( | ||
func=identity_one_to_one, | ||
inputs="ds3", | ||
outputs="ds6", | ||
name="f4", | ||
), | ||
node( | ||
func=identity_one_to_one, | ||
inputs="ds4", | ||
outputs="ds8", | ||
name="f5", | ||
), | ||
node( | ||
func=identity_one_to_one, | ||
inputs="ds6", | ||
outputs="ds7", | ||
name="f6", | ||
), | ||
node( | ||
func=lambda x, y: x, | ||
inputs=["ds3", "ds6"], | ||
outputs="ds9", | ||
name="f7", | ||
), | ||
], | ||
) | ||
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nodes, dependencies = group_memory_nodes(mock_catalog, mock_pipeline) | ||
sequence = [ | ||
[node_.name for node_ in node_sequence] for node_sequence in nodes.values() | ||
] | ||
assert sequence == expected_nodes | ||
assert dict(dependencies) == expected_dependencies | ||
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def test_is_memory_dataset(): | ||
catalog = DataCatalog() | ||
catalog.add("parameters", {"hello": "world"}) | ||
catalog.add("params:hello", "world") | ||
catalog.add("my_dataset", MemoryDataSet(True)) | ||
catalog.add("test_dataset", TestDataSet()) | ||
assert not _is_memory_dataset(catalog, "parameters") | ||
assert not _is_memory_dataset(catalog, "params:hello") | ||
assert _is_memory_dataset(catalog, "my_dataset") | ||
assert not _is_memory_dataset(catalog, "test_dataset") |
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