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GPU support on GKE not available #1246

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mmatiaschek opened this issue Jul 19, 2018 · 5 comments
Closed

GPU support on GKE not available #1246

mmatiaschek opened this issue Jul 19, 2018 · 5 comments
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area/jupyter Issues related to Jupyter kind/question platform/gcp

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@mmatiaschek
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mmatiaschek commented Jul 19, 2018 •
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KUBEFLOW_VERSION=0.2.2

After setting up a pretty default cluster on GKE with "getting-started-gke" deploy.sh with a gpu-pool-initialNodeCount: 1 i could not spawn gpu images on jupyterhub. Removing the taint on the gpu node with kubectl taint nodes gke-hub-gpu-pool-9d1db964-9gqn nvidia.com/gpu:NoSchedule- allows me to spawn the image gcr.io/kubeflow-images-public/tensorflow-1.8.0-notebook-gpu:v0.2.1.

Now i created a jupyter notebook and executed the following:

from tensorflow.python.client import device_lib
print(device_lib.list_local_devices())

but i get this error:

---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
/opt/conda/lib/python3.6/site-packages/tensorflow/python/pywrap_tensorflow.py in <module>()
     57 
---> 58   from tensorflow.python.pywrap_tensorflow_internal import *
     59   from tensorflow.python.pywrap_tensorflow_internal import __version__

/opt/conda/lib/python3.6/site-packages/tensorflow/python/pywrap_tensorflow_internal.py in <module>()
     27             return _mod
---> 28     _pywrap_tensorflow_internal = swig_import_helper()
     29     del swig_import_helper

/opt/conda/lib/python3.6/site-packages/tensorflow/python/pywrap_tensorflow_internal.py in swig_import_helper()
     23             try:
---> 24                 _mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
     25             finally:

/opt/conda/lib/python3.6/imp.py in load_module(name, file, filename, details)
    242         else:
--> 243             return load_dynamic(name, filename, file)
    244     elif type_ == PKG_DIRECTORY:

/opt/conda/lib/python3.6/imp.py in load_dynamic(name, path, file)
    342             name=name, loader=loader, origin=path)
--> 343         return _load(spec)
    344 

ImportError: libcuda.so.1: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

ImportError                               Traceback (most recent call last)
<ipython-input-1-0ca82b29604d> in <module>()
----> 1 from tensorflow.python.client import device_lib
      2 print(device_lib.list_local_devices())

/opt/conda/lib/python3.6/site-packages/tensorflow/__init__.py in <module>()
     22 
     23 # pylint: disable=g-bad-import-order
---> 24 from tensorflow.python import pywrap_tensorflow  # pylint: disable=unused-import
     25 # pylint: disable=wildcard-import
     26 from tensorflow.tools.api.generator.api import *  # pylint: disable=redefined-builtin

/opt/conda/lib/python3.6/site-packages/tensorflow/python/__init__.py in <module>()
     47 import numpy as np
     48 
---> 49 from tensorflow.python import pywrap_tensorflow
     50 
     51 # Protocol buffers

/opt/conda/lib/python3.6/site-packages/tensorflow/python/pywrap_tensorflow.py in <module>()
     72 for some common reasons and solutions.  Include the entire stack trace
     73 above this error message when asking for help.""" % traceback.format_exc()
---> 74   raise ImportError(msg)
     75 
     76 # pylint: enable=wildcard-import,g-import-not-at-top,unused-import,line-too-long

ImportError: Traceback (most recent call last):
  File "/opt/conda/lib/python3.6/site-packages/tensorflow/python/pywrap_tensorflow.py", line 58, in <module>
    from tensorflow.python.pywrap_tensorflow_internal import *
  File "/opt/conda/lib/python3.6/site-packages/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
    _pywrap_tensorflow_internal = swig_import_helper()
  File "/opt/conda/lib/python3.6/site-packages/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
    _mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
  File "/opt/conda/lib/python3.6/imp.py", line 243, in load_module
    return load_dynamic(name, filename, file)
  File "/opt/conda/lib/python3.6/imp.py", line 343, in load_dynamic
    return _load(spec)
ImportError: libcuda.so.1: cannot open shared object file: No such file or directory


Failed to load the native TensorFlow runtime.

See https://www.tensorflow.org/install/install_sources#common_installation_problems

for some common reasons and solutions.  Include the entire stack trace
above this error message when asking for help.

more information:

$ kubectl get nodes
NAME                                 STATUS     ROLES     AGE       VERSION
gke-hub-default-pool-ad675cd4-0lcq   Ready      <none>    5h        v1.9.6-gke.1
gke-hub-default-pool-ad675cd4-5sf3   Ready      <none>    1h        v1.9.6-gke.1
gke-hub-default-pool-ad675cd4-7kk2   Ready      <none>    1h        v1.9.6-gke.1
gke-hub-default-pool-ad675cd4-nccc   Ready      <none>    5h        v1.9.6-gke.1
gke-hub-gpu-pool-9d1db964-9gqn       NotReady   <none>    3s        v1.9.6-gke.1

$ kubectl get pods -n kubeflow -o wide
NAME                                          READY     STATUS    RESTARTS   AGE       IP           NODE
ambassador-9f658d5bc-bbhfw                    2/2       Running   0          1h        10.60.0.9    gke-hub-default-pool-ad675cd4-nccc
ambassador-9f658d5bc-rxlnl                    2/2       Running   0          1h        10.60.4.4    gke-hub-default-pool-ad675cd4-5sf3
ambassador-9f658d5bc-w7cmr                    2/2       Running   0          1h        10.60.1.9    gke-hub-default-pool-ad675cd4-0lcq
centraldashboard-6665fc46cb-tz92l             1/1       Running   0          1h        10.60.0.8    gke-hub-default-pool-ad675cd4-nccc
cert-manager-555c87df98-jtgsk                 2/2       Running   0          1h        10.60.0.12   gke-hub-default-pool-ad675cd4-nccc
cgm-pd-provisioner-5cd8b667b4-kwnzh           1/1       Running   0          4m        10.60.4.5    gke-hub-default-pool-ad675cd4-5sf3
cloud-endpoints-controller-6584cfdf54-fnfrm   1/1       Running   0          1h        10.60.1.12   gke-hub-default-pool-ad675cd4-0lcq
envoy-76774f8d5c-tcqlc                        2/2       Running   2          1h        10.60.3.4    gke-hub-default-pool-ad675cd4-7kk2
envoy-76774f8d5c-vllhw                        2/2       Running   2          1h        10.60.3.3    gke-hub-default-pool-ad675cd4-7kk2
envoy-76774f8d5c-xpgxj                        2/2       Running   1          1h        10.60.4.3    gke-hub-default-pool-ad675cd4-5sf3
iap-enabler-6586ccc64-r6b46                   1/1       Running   0          1h        10.60.1.13   gke-hub-default-pool-ad675cd4-0lcq
kube-metacontroller-69fcb8c5d4-k4kq2          1/1       Running   0          1h        10.60.0.11   gke-hub-default-pool-ad675cd4-nccc
spartakus-volunteer-7f5ccf89d7-bvjg4          1/1       Running   0          1h        10.60.1.8    gke-hub-default-pool-ad675cd4-0lcq
tf-hub-0                                      1/1       Running   0          1h        10.60.0.10   gke-hub-default-pool-ad675cd4-nccc
tf-job-dashboard-644865ddff-vbg57             1/1       Running   0          1h        10.60.1.10   gke-hub-default-pool-ad675cd4-0lcq
tf-job-operator-v1alpha2-75bcb7f5f7-7nvqh     1/1       Running   0          1h        10.60.1.11   gke-hub-default-pool-ad675cd4-0lcq
whoami-app-6d9d8dc867-9xz76                   1/1       Running   0          1h        10.60.0.13   gke-hub-default-pool-ad675cd4-nccc

$ kubectl describe node gke-hub-gpu-pool-9d1db964-9gqn
Name:               gke-hub-gpu-pool-9d1db964-9gqn
Roles:              <none>
Labels:             beta.kubernetes.io/arch=amd64
                    beta.kubernetes.io/fluentd-ds-ready=true
                    beta.kubernetes.io/instance-type=n1-standard-4
                    beta.kubernetes.io/os=linux
                    cloud.google.com/gke-accelerator=nvidia-tesla-k80
                    cloud.google.com/gke-nodepool=gpu-pool
                    failure-domain.beta.kubernetes.io/region=europe-west1
                    failure-domain.beta.kubernetes.io/zone=europe-west1-b
                    kubernetes.io/hostname=gke-hub-gpu-pool-9d1db964-9gqn
Annotations:        node.alpha.kubernetes.io/ttl=0
                    volumes.kubernetes.io/controller-managed-attach-detach=true
CreationTimestamp:  Thu, 19 Jul 2018 22:55:04 +0200
Taints:             nvidia.com/gpu=present:NoSchedule
Unschedulable:      false
Conditions:
  Type                 Status  LastHeartbeatTime                 LastTransitionTime                Reason                       Message
  ----                 ------  -----------------                 ------------------                ------                       -------
  KernelDeadlock       False   Thu, 19 Jul 2018 22:55:04 +0200   Thu, 19 Jul 2018 22:55:03 +0200   KernelHasNoDeadlock          kernel has no deadlock
  NetworkUnavailable   False   Thu, 19 Jul 2018 22:55:19 +0200   Thu, 19 Jul 2018 22:55:19 +0200   RouteCreated                 RouteController created a route
  OutOfDisk            False   Thu, 19 Jul 2018 22:55:54 +0200   Thu, 19 Jul 2018 22:55:04 +0200   KubeletHasSufficientDisk     kubelet has sufficient disk space available
  MemoryPressure       False   Thu, 19 Jul 2018 22:55:54 +0200   Thu, 19 Jul 2018 22:55:04 +0200   KubeletHasSufficientMemory   kubelet has sufficient memory available
  DiskPressure         False   Thu, 19 Jul 2018 22:55:54 +0200   Thu, 19 Jul 2018 22:55:04 +0200   KubeletHasNoDiskPressure     kubelet has no disk pressure
  Ready                True    Thu, 19 Jul 2018 22:55:54 +0200   Thu, 19 Jul 2018 22:55:24 +0200   KubeletReady                 kubelet is posting ready status. AppArmor enabled
Addresses:
  InternalIP:  10.132.0.6
  ExternalIP:  146.148.13.101
  Hostname:    gke-hub-gpu-pool-9d1db964-9gqn
Capacity:
 cpu:     4
 memory:  15405960Ki
 pods:    110
Allocatable:
 cpu:     3920m
 memory:  12706696Ki
 pods:    110
System Info:
 Machine ID:                 5b124e59e9078f45cc7709c4ed99fa94
 System UUID:                5B124E59-E907-8F45-CC77-09C4ED99FA94
 Boot ID:                    060ac762-0a32-490a-b50f-050894488776
 Kernel Version:             4.4.111+
 OS Image:                   Container-Optimized OS from Google
 Operating System:           linux
 Architecture:               amd64
 Container Runtime Version:  docker://17.3.2
 Kubelet Version:            v1.9.6-gke.1
 Kube-Proxy Version:         v1.9.6-gke.1
PodCIDR:                     10.60.5.0/24
ExternalID:                  5156590157901415579
ProviderID:                  gce://child-growth-monitor/europe-west1-b/gke-hub-gpu-pool-9d1db964-9gqn
Non-terminated Pods:         (4 in total)
  Namespace                  Name                                         CPU Requests  CPU Limits  Memory Requests  Memory Limits
  ---------                  ----                                         ------------  ----------  ---------------  -------------
  kube-system                fluentd-gcp-v2.0.10-94k5b                    100m (2%)     0 (0%)      200Mi (1%)       300Mi (2%)
  kube-system                kube-proxy-gke-hub-gpu-pool-9d1db964-9gqn    100m (2%)     0 (0%)      0 (0%)           0 (0%)
  kube-system                nvidia-driver-installer-vzsz4                150m (3%)     0 (0%)      0 (0%)           0 (0%)
  kube-system                nvidia-gpu-device-plugin-vv89m               50m (1%)      50m (1%)    10Mi (0%)        10Mi (0%)
Allocated resources:
  (Total limits may be over 100 percent, i.e., overcommitted.)
  CPU Requests  CPU Limits  Memory Requests  Memory Limits
  ------------  ----------  ---------------  -------------
  400m (10%)    50m (1%)    210Mi (1%)       310Mi (2%)
Events:
  Type    Reason                   Age                From                                        Message
  ----    ------                   ----               ----                                        -------
  Normal  Starting                 53s                kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Starting kubelet.
  Normal  NodeHasSufficientDisk    53s (x2 over 53s)  kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Node gke-hub-gpu-pool-9d1db964-9gqn status is now: NodeHasSufficientDisk
  Normal  NodeHasSufficientMemory  53s (x2 over 53s)  kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Node gke-hub-gpu-pool-9d1db964-9gqn status is now: NodeHasSufficientMemory
  Normal  NodeHasNoDiskPressure    53s (x2 over 53s)  kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Node gke-hub-gpu-pool-9d1db964-9gqn status is now: NodeHasNoDiskPressure
  Normal  NodeAllocatableEnforced  53s                kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Updated Node Allocatable limit across pods
  Normal  Starting                 49s                kube-proxy, gke-hub-gpu-pool-9d1db964-9gqn  Starting kube-proxy.
  Normal  NodeReady                33s                kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Node gke-hub-gpu-pool-9d1db964-9gqn status is now: NodeReady

Spawning image gcr.io/kubeflow-images-public/tensorflow-1.8.0-notebook-gpu:v0.2.1 via JupyterHub.

$ kubectl get pods -n kubeflow -o wide
NAME                                                          READY     STATUS    RESTARTS   AGE       IP           NODE
ambassador-9f658d5bc-bbhfw                                    2/2       Running   0          1h        10.60.0.9    gke-hub-default-pool-ad675cd4-nccc
ambassador-9f658d5bc-rxlnl                                    2/2       Running   0          1h        10.60.4.4    gke-hub-default-pool-ad675cd4-5sf3
ambassador-9f658d5bc-w7cmr                                    2/2       Running   0          1h        10.60.1.9    gke-hub-default-pool-ad675cd4-0lcq
centraldashboard-6665fc46cb-tz92l                             1/1       Running   0          1h        10.60.0.8    gke-hub-default-pool-ad675cd4-nccc
cert-manager-555c87df98-jtgsk                                 2/2       Running   0          1h        10.60.0.12   gke-hub-default-pool-ad675cd4-nccc
cgm-pd-provisioner-5cd8b667b4-kwnzh                           1/1       Running   0          6m        10.60.4.5    gke-hub-default-pool-ad675cd4-5sf3
cloud-endpoints-controller-6584cfdf54-fnfrm                   1/1       Running   0          1h        10.60.1.12   gke-hub-default-pool-ad675cd4-0lcq
envoy-76774f8d5c-tcqlc                                        2/2       Running   2          1h        10.60.3.4    gke-hub-default-pool-ad675cd4-7kk2
envoy-76774f8d5c-vllhw                                        2/2       Running   2          1h        10.60.3.3    gke-hub-default-pool-ad675cd4-7kk2
envoy-76774f8d5c-xpgxj                                        2/2       Running   1          1h        10.60.4.3    gke-hub-default-pool-ad675cd4-5sf3
iap-enabler-6586ccc64-r6b46                                   1/1       Running   0          1h        10.60.1.13   gke-hub-default-pool-ad675cd4-0lcq
jupyter-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom   0/1       Pending   0          7s        <none>       <none>
kube-metacontroller-69fcb8c5d4-k4kq2                          1/1       Running   0          1h        10.60.0.11   gke-hub-default-pool-ad675cd4-nccc
spartakus-volunteer-7f5ccf89d7-bvjg4                          1/1       Running   0          1h        10.60.1.8    gke-hub-default-pool-ad675cd4-0lcq
tf-hub-0                                                      1/1       Running   0          1h        10.60.0.10   gke-hub-default-pool-ad675cd4-nccc
tf-job-dashboard-644865ddff-vbg57                             1/1       Running   0          1h        10.60.1.10   gke-hub-default-pool-ad675cd4-0lcq
tf-job-operator-v1alpha2-75bcb7f5f7-7nvqh                     1/1       Running   0          1h        10.60.1.11   gke-hub-default-pool-ad675cd4-0lcq
whoami-app-6d9d8dc867-9xz76                                   1/1       Running   0          1h        10.60.0.13   gke-hub-default-pool-ad675cd4-nccc

$ kubectl -n kubeflow describe po/jupyter-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom
Name:         jupyter-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom
Namespace:    kubeflow
Node:         <none>
Labels:       app=jupyterhub
              component=singleuser-server
              heritage=jupyterhub
Annotations:  hub.jupyter.org/username=accounts.google.com:[email protected]
Status:       Pending
IP:
Containers:
  notebook:
    Image:      gcr.io/kubeflow-images-public/tensorflow-1.8.0-notebook-gpu:v0.2.1
    Port:       8888/TCP
    Host Port:  0/TCP
    Args:
      start-singleuser.sh
      --ip="0.0.0.0"
      --port=8888
      --allow-root
    Requests:
      cpu:     500m
      memory:  1Gi
    Environment:
      JUPYTERHUB_API_TOKEN:           5f54e7941eb74132b1d58fba8db68031
      JPY_API_TOKEN:                  5f54e7941eb74132b1d58fba8db68031
      JUPYTERHUB_CLIENT_ID:           jupyterhub-user-accounts.google.com%3Ammatiaschek%40gmail.com
      JUPYTERHUB_HOST:
      JUPYTERHUB_OAUTH_CALLBACK_URL:  /user/accounts.google.com%[email protected]/oauth_callback
      JUPYTERHUB_USER:                accounts.google.com:[email protected]
      JUPYTERHUB_API_URL:             http://tf-hub-0:8081/hub/api
      JUPYTERHUB_BASE_URL:            /
      JUPYTERHUB_SERVICE_PREFIX:      /user/accounts.google.com%[email protected]/
      MEM_GUARANTEE:                  1Gi
      CPU_GUARANTEE:                  500m
    Mounts:
      /home/jovyan from volume-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom (rw)
      /var/run/secrets/kubernetes.io/serviceaccount from no-api-access-please (ro)
Conditions:
  Type           Status
  PodScheduled   False
Volumes:
  volume-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom:
    Type:       PersistentVolumeClaim (a reference to a PersistentVolumeClaim in the same namespace)
    ClaimName:  claim-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom
    ReadOnly:   false
  no-api-access-please:
    Type:        EmptyDir (a temporary directory that shares a pod's lifetime)
    Medium:
QoS Class:       Burstable
Node-Selectors:  <none>
Tolerations:     node.kubernetes.io/not-ready:NoExecute for 300s
                 node.kubernetes.io/unreachable:NoExecute for 300s
Events:
  Type     Reason            Age                From               Message
  ----     ------            ----               ----               -------
  Warning  FailedScheduling  12s (x6 over 27s)  default-scheduler  0/5 nodes are available: 1 PodToleratesNodeTaints, 4 Insufficient cpu, 4 Insufficient memory.

Removing the taint

$ kubectl taint nodes gke-hub-gpu-pool-9d1db964-9gqn nvidia.com/gpu:NoSchedule-
node "gke-hub-gpu-pool-9d1db964-9gqn" untainted

$ kubectl describe node gke-hub-gpu-pool-9d1db964-9gqn
Name:               gke-hub-gpu-pool-9d1db964-9gqn
Roles:              <none>
Labels:             beta.kubernetes.io/arch=amd64
                    beta.kubernetes.io/fluentd-ds-ready=true
                    beta.kubernetes.io/instance-type=n1-standard-4
                    beta.kubernetes.io/os=linux
                    cloud.google.com/gke-accelerator=nvidia-tesla-k80
                    cloud.google.com/gke-nodepool=gpu-pool
                    failure-domain.beta.kubernetes.io/region=europe-west1
                    failure-domain.beta.kubernetes.io/zone=europe-west1-b
                    kubernetes.io/hostname=gke-hub-gpu-pool-9d1db964-9gqn
Annotations:        node.alpha.kubernetes.io/ttl=0
                    volumes.kubernetes.io/controller-managed-attach-detach=true
CreationTimestamp:  Thu, 19 Jul 2018 22:55:04 +0200
Taints:             <none>
Unschedulable:      false
Conditions:
  Type                 Status  LastHeartbeatTime                 LastTransitionTime                Reason                       Message
  ----                 ------  -----------------                 ------------------                ------                       -------
  KernelDeadlock       False   Thu, 19 Jul 2018 23:04:11 +0200   Thu, 19 Jul 2018 22:55:03 +0200   KernelHasNoDeadlock          kernel has no deadlock
  NetworkUnavailable   False   Thu, 19 Jul 2018 22:55:19 +0200   Thu, 19 Jul 2018 22:55:19 +0200   RouteCreated                 RouteController created a route
  OutOfDisk            False   Thu, 19 Jul 2018 23:04:15 +0200   Thu, 19 Jul 2018 22:55:04 +0200   KubeletHasSufficientDisk     kubelet has sufficient disk space available
  MemoryPressure       False   Thu, 19 Jul 2018 23:04:15 +0200   Thu, 19 Jul 2018 22:55:04 +0200   KubeletHasSufficientMemory   kubelet has sufficient memory available
  DiskPressure         False   Thu, 19 Jul 2018 23:04:15 +0200   Thu, 19 Jul 2018 22:55:04 +0200   KubeletHasNoDiskPressure     kubelet has no disk pressure
  Ready                True    Thu, 19 Jul 2018 23:04:15 +0200   Thu, 19 Jul 2018 22:55:24 +0200   KubeletReady                 kubelet is posting ready status. AppArmor enabled
Addresses:
  InternalIP:  10.132.0.6
  ExternalIP:  146.148.13.101
  Hostname:    gke-hub-gpu-pool-9d1db964-9gqn
Capacity:
 cpu:             4
 memory:          15405960Ki
 nvidia.com/gpu:  1
 pods:            110
Allocatable:
 cpu:             3920m
 memory:          12706696Ki
 nvidia.com/gpu:  1
 pods:            110
System Info:
 Machine ID:                 5b124e59e9078f45cc7709c4ed99fa94
 System UUID:                5B124E59-E907-8F45-CC77-09C4ED99FA94
 Boot ID:                    060ac762-0a32-490a-b50f-050894488776
 Kernel Version:             4.4.111+
 OS Image:                   Container-Optimized OS from Google
 Operating System:           linux
 Architecture:               amd64
 Container Runtime Version:  docker://17.3.2
 Kubelet Version:            v1.9.6-gke.1
 Kube-Proxy Version:         v1.9.6-gke.1
PodCIDR:                     10.60.5.0/24
ExternalID:                  5156590157901415579
ProviderID:                  gce://child-growth-monitor/europe-west1-b/gke-hub-gpu-pool-9d1db964-9gqn
Non-terminated Pods:         (5 in total)
  Namespace                  Name                                                           CPU Requests  CPU Limits  Memory Requests  Memory Limits
  ---------                  ----                                                           ------------  ----------  ---------------  -------------
  kube-system                fluentd-gcp-v2.0.10-94k5b                                      100m (2%)     0 (0%)      200Mi (1%)       300Mi (2%)
  kube-system                kube-proxy-gke-hub-gpu-pool-9d1db964-9gqn                      100m (2%)     0 (0%)      0 (0%)           0 (0%)
  kube-system                nvidia-driver-installer-vzsz4                                  150m (3%)     0 (0%)      0 (0%)           0 (0%)
  kube-system                nvidia-gpu-device-plugin-vv89m                                 50m (1%)      50m (1%)    10Mi (0%)        10Mi (0%)
  kubeflow                   jupyter-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom    500m (12%)    0 (0%)      1Gi (8%)         0 (0%)
Allocated resources:
  (Total limits may be over 100 percent, i.e., overcommitted.)
  CPU Requests  CPU Limits  Memory Requests  Memory Limits
  ------------  ----------  ---------------  -------------
  900m (22%)    50m (1%)    1234Mi (9%)      310Mi (2%)
Events:
  Type    Reason                   Age              From                                        Message
  ----    ------                   ----             ----                                        -------
  Normal  Starting                 9m               kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Starting kubelet.
  Normal  NodeHasSufficientDisk    9m (x2 over 9m)  kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Node gke-hub-gpu-pool-9d1db964-9gqn status is now: NodeHasSufficientDisk
  Normal  NodeHasSufficientMemory  9m (x2 over 9m)  kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Node gke-hub-gpu-pool-9d1db964-9gqn status is now: NodeHasSufficientMemory
  Normal  NodeHasNoDiskPressure    9m (x2 over 9m)  kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Node gke-hub-gpu-pool-9d1db964-9gqn status is now: NodeHasNoDiskPressure
  Normal  NodeAllocatableEnforced  9m               kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Updated Node Allocatable limit across pods
  Normal  Starting                 9m               kube-proxy, gke-hub-gpu-pool-9d1db964-9gqn  Starting kube-proxy.
  Normal  NodeReady                8m               kubelet, gke-hub-gpu-pool-9d1db964-9gqn     Node gke-hub-gpu-pool-9d1db964-9gqn status is now: NodeReady

$ kubectl -n kubeflow describe pod jupyter-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom
Name:         jupyter-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom
Namespace:    kubeflow
Node:         gke-hub-gpu-pool-9d1db964-9gqn/10.132.0.6
Start Time:   Thu, 19 Jul 2018 23:03:55 +0200
Labels:       app=jupyterhub
              component=singleuser-server
              heritage=jupyterhub
Annotations:  hub.jupyter.org/username=accounts.google.com:[email protected]
Status:       Pending
IP:
Containers:
  notebook:
    Container ID:
    Image:         gcr.io/kubeflow-images-public/tensorflow-1.8.0-notebook-gpu:v0.2.1
    Image ID:
    Port:          8888/TCP
    Host Port:     0/TCP
    Args:
      start-singleuser.sh
      --ip="0.0.0.0"
      --port=8888
      --allow-root
    State:          Waiting
      Reason:       ContainerCreating
    Ready:          False
    Restart Count:  0
    Requests:
      cpu:     500m
      memory:  1Gi
    Environment:
      JUPYTERHUB_API_TOKEN:           5f54e7941eb74132b1d58fba8db68031
      JPY_API_TOKEN:                  5f54e7941eb74132b1d58fba8db68031
      JUPYTERHUB_CLIENT_ID:           jupyterhub-user-accounts.google.com%3Ammatiaschek%40gmail.com
      JUPYTERHUB_HOST:
      JUPYTERHUB_OAUTH_CALLBACK_URL:  /user/accounts.google.com%[email protected]/oauth_callback
      JUPYTERHUB_USER:                accounts.google.com:[email protected]
      JUPYTERHUB_API_URL:             http://tf-hub-0:8081/hub/api
      JUPYTERHUB_BASE_URL:            /
      JUPYTERHUB_SERVICE_PREFIX:      /user/accounts.google.com%[email protected]/
      MEM_GUARANTEE:                  1Gi
      CPU_GUARANTEE:                  500m
    Mounts:
      /home/jovyan from volume-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom (rw)
      /var/run/secrets/kubernetes.io/serviceaccount from no-api-access-please (ro)
Conditions:
  Type           Status
  Initialized    True
  Ready          False
  PodScheduled   True
Volumes:
  volume-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom:
    Type:       PersistentVolumeClaim (a reference to a PersistentVolumeClaim in the same namespace)
    ClaimName:  claim-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom
    ReadOnly:   false
  no-api-access-please:
    Type:        EmptyDir (a temporary directory that shares a pod's lifetime)
    Medium:
QoS Class:       Burstable
Node-Selectors:  <none>
Tolerations:     node.kubernetes.io/not-ready:NoExecute for 300s
                 node.kubernetes.io/unreachable:NoExecute for 300s
Events:
  Type     Reason                 Age               From                                     Message
  ----     ------                 ----              ----                                     -------
  Warning  FailedScheduling       2m (x22 over 7m)  default-scheduler                        0/5 nodes are available: 1 PodToleratesNodeTaints, 4 Insufficient cpu, 4 Insufficient memory.
  Normal   Scheduled              1m                default-scheduler                        Successfully assigned jupyter-accounts-2egoogle-2ecom-3ammatiaschek-40gmail-2ecom to gke-hub-gpu-pool-9d1db964-9gqn
  Normal   SuccessfulMountVolume  1m                kubelet, gke-hub-gpu-pool-9d1db964-9gqn  MountVolume.SetUp succeeded for volume "no-api-access-please"
  Normal   SuccessfulMountVolume  1m                kubelet, gke-hub-gpu-pool-9d1db964-9gqn  MountVolume.SetUp succeeded for volume "pvc-348452ed-8b8d-11e8-9c05-42010a8400f9"
  Normal   Pulling                1m                kubelet, gke-hub-gpu-pool-9d1db964-9gqn  pulling image "gcr.io/kubeflow-images-public/tensorflow-1.8.0-notebook-gpu:v0.2.1"

then of course i can still not use the GPU because the container image does not seem to have the right drivers for cloud.google.com/gke-accelerator=nvidia-tesla-k80

any help appreciated.
@mmatiaschek mmatiaschek changed the title taint prevents jupyterhub gpu container from spawning GPU support on GKE not available Jul 19, 2018
@swiftdiaries
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Others can correct me if I'm wrong, I think you need to have the DaemonSet installed in your cluster for Nvidia drivers.

$ kubectl apply -f https://raw.githubusercontent.com/GoogleCloudPlatform/container-engine-accelerators/stable/nvidia-driver-installer/cos/daemonset-preloaded.yaml

Source: https://cloud.google.com/kubernetes-engine/docs/concepts/gpus

@mmatiaschek
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@swiftdiaries unfortunately not. It is in deploy.sh and to make sure i just tried it manually, no success.

@jlewi
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jlewi commented Jul 20, 2018

It doesn't look like you requested GPUs for your notebook

    Requests:
      cpu:     500m
      memory:  1Gi

In the JupyterHub spawner did you supply extra resource limits

e.g

{"nvidia.com/gpu":1}

@jlewi jlewi added the area/jupyter Issues related to Jupyter label Jul 20, 2018
@jlewi
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jlewi commented Jul 20, 2018

The docs are a bit buried here
https://www.kubeflow.org/docs/about/user_guide/#bringing-up-a-jupyter-notebook

@mmatiaschek
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yes, i have tried it with and without this spawner option. In the end the exact option that is documented worked for me: {"nvidia.com/gpu": "1"}

The spawner makes another suggestion and i think it didn't work:
image

Thank you so much for your help!!

yanniszark pushed a commit to arrikto/kubeflow that referenced this issue Feb 15, 2021
@andreyvelich
Fix Trial parameter name for v1beta1 DARTS example (kubeflow#1246)
3377a48 
* Fix Trial parameter in darts example

* Fix description
surajkota pushed a commit to surajkota/kubeflow that referenced this issue Jun 13, 2022
@adrian555
update kfctl_ibm KfDef to kustomize v3 (kubeflow#1246)
bc5c7a7 
* update kfctl_ibm kfdef to kustomize v3

* small update to README

* update to use katib, minio and mysql generic

* update after platform test

* fix test failure
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