fix(compiler): make sure ts files in node_modules always transform properly
#1525
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Summary
In #1385 we had this fix. Then in 25.3.0 and 25.3.1 I removed it because the new codes for compiler worked for the case of monorepo. However, the solution in #1385 actually can cover all the cases. So this PR is to bring that fix back.
closes #1523
Test plan
Added the repo of issue #1523 to our e2e tests.
Does this PR introduce a breaking change?
Other information
N.A.