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Cannot allocate memory #430

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emilyhokning opened this issue Aug 20, 2024 · 0 comments
Open

Cannot allocate memory #430

emilyhokning opened this issue Aug 20, 2024 · 0 comments

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@emilyhokning
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Pls help! not sure why cannot allocate memory only for some of the fastq files,
should I split my fastq file (it is only 3.66 GB):
my command:

bwa aln -t 12 Homo_sapiens.GRCh38.dna.toplevel.fa.gz trimSRR6701645.fastq > SRR6701645_H3K27me3WT.sai
bwa samse Homo_sapiens.GRCh38.dna.toplevel.fa.gz SRR6701645_H3K27me3WT.sai trimSRR6701645.fastq > SRR6701645_H3K27me3WT.sam

Failed to allocate 18446744025547218160 bytes at bwase.c line 66: Cannot allocate memory
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