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Pull requests: lh3/bwa

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Pull requests list

fixed a compiler error
#426 opened Jul 27, 2024 by kemin711 Loading…
Fix kt_for() declaration parameter types
#414 opened Mar 18, 2024 by jmarshall Loading…
1
Fix RNEXT output in xa2multi.pl
#391 opened Apr 26, 2023 by tsnorri Loading…
1
Added -fPIC as compile flag
#369 opened Aug 19, 2022 by lennykovac Loading…
add break condition to making cigar string
#362 opened Jul 22, 2022 by gayoung-MetisX Loading…
add condition to BSW in case of reversing
#361 opened Jul 22, 2022 by gayoung-MetisX Loading…
Use SAM headers from index directory's <prefix>.hdr if it exists
#348 opened Mar 18, 2022 by jmarshall Loading…
6
Avoid conflicting with HTSlib's kstring.c functions
#346 opened Mar 7, 2022 by jmarshall Loading…
1
Freebsd and hurd compatibility
#312 opened Feb 4, 2021 by mr-c Loading…
Fix some typos
#311 opened Feb 4, 2021 by mr-c Loading…
Convert "properly read" constants to command line parameters
#309 opened Jan 29, 2021 by gdgib-roche Loading…
1
mem_process_seqs: fix redundant memory allocation
#308 opened Jan 27, 2021 by starling13 Loading…
change strlen to seq->name.l
#291 opened Jul 15, 2020 by lindenb Loading…
Remove some unused variables
#288 opened Jul 8, 2020 by ilkerg Loading…
fixed typo
#286 opened Jun 4, 2020 by bounlu Loading…
travis: added arm64, ppc64le and s390x tests with simde
#283 opened May 17, 2020 by junaruga Loading…
1
7
performance increase in alignment
#279 opened Apr 23, 2020 by andreasbuhr Loading…
7
set optimization from -O2 to -O3, 3.4 % performance increase observed
#278 opened Apr 22, 2020 by andreasbuhr Loading…
1
Windows Subsystem for Linux (WSL) FAQ
#264 opened Dec 29, 2019 by karolzlot Loading…
Update bwape.c to allow equal reads in pair to be mapped as mapped in proper pair
#259 opened Nov 25, 2019 by schultzdre Loading…
Fix potential assertion in bntseq fails #120
#243 opened Jun 25, 2019 by yanlinlin82 Loading…
1
fix incorrect secondary alignment in ksw_align
#227 opened Dec 5, 2018 by mirounga Loading…
bwa mem 20% speedup with vector instructions (Fixed intel-extend branch)
#226 opened Nov 24, 2018 by zamaudio Loading…
1
Fix typo: Malformated → Malformed
#212 opened Aug 2, 2018 by tskir Loading…
Add -C param for sampe/samse, to copy fastq comments into sam output
#203 opened May 30, 2018 by grahamgower Loading…
ProTip! Exclude everything labeled bug with -label:bug.