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Ropebwt3-3.5 (r203)
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@lh3 lh3 released this 31 Aug 17:11
· 34 commits to master since this release
v3.5
70e929a

Notable changes:

  • New feature: added the end-to-end mode (-e) to sw. It outputs local
    haplotypes similar to the entire query string.

  • New feature: hapdiv command to estimate local haplotype diversity. It
    applies the end-to-end mode to slide 101-mers and reports the number of
    haplotypes within certain edit distance threshold.

  • Improvement: ~30% faster BWT construction for large datasets.

  • Breaking: in sw, changed the default scoring to the BLASTN scoring

(3.5: 31 August 2024, r203)

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