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Pr/374 #1
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…t does not work correctly with mutable rows.
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liancheng
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Apr 11, 2014
This patch marks some existing classes as private[spark] and adds two types of API annotations: - `EXPERIMENTAL API` = experimental user-facing module - `DEVELOPER API - UNSTABLE` = developer-facing API that might change There is some discussion of the different mechanisms for doing this here: https://issues.apache.org/jira/browse/SPARK-1081 I was pretty aggressive with marking things private. Keep in mind that if we want to open something up in the future we can, but we can never reduce visibility. A few notes here: - In the past we've been inconsistent with the visiblity of the X-RDD classes. This patch marks them private whenever there is an existing function in RDD that can directly creat them (e.g. CoalescedRDD and rdd.coalesce()). One trade-off here is users can't subclass them. - Noted that compression and serialization formats don't have to be wire compatible across versions. - Compression codecs and serialization formats are semi-private as users typically don't instantiate them directly. - Metrics sources are made private - user only interacts with them through Spark's reflection Author: Patrick Wendell <[email protected]> Author: Andrew Or <[email protected]> Closes apache#274 from pwendell/private-apis and squashes the following commits: 44179e4 [Patrick Wendell] Merge remote-tracking branch 'apache-github/master' into private-apis 042c803 [Patrick Wendell] spark.annotations -> spark.annotation bfe7b52 [Patrick Wendell] Adding experimental for approximate counts 8d0c873 [Patrick Wendell] Warning in SparkEnv 99b223a [Patrick Wendell] Cleaning up annotations e849f64 [Patrick Wendell] Merge pull request #2 from andrewor14/annotations 982a473 [Andrew Or] Generalize jQuery matching for non Spark-core API docs a01c076 [Patrick Wendell] Merge pull request #1 from andrewor14/annotations c1bcb41 [Andrew Or] DeveloperAPI -> DeveloperApi 0d48908 [Andrew Or] Comments and new lines (minor) f3954e0 [Andrew Or] Add identifier tags in comments to work around scaladocs bug 99192ef [Andrew Or] Dynamically add badges based on annotations 824011b [Andrew Or] Add support for injecting arbitrary JavaScript to API docs 037755c [Patrick Wendell] Some changes after working with andrew or f7d124f [Patrick Wendell] Small fixes c318b24 [Patrick Wendell] Use CSS styles e4c76b9 [Patrick Wendell] Logging f390b13 [Patrick Wendell] Better visibility for workaround constructors d6b0afd [Patrick Wendell] Small chang to existing constructor 403ba52 [Patrick Wendell] Style fix 870a7ba [Patrick Wendell] Work around for SI-8479 7fb13b2 [Patrick Wendell] Changes to UnionRDD and EmptyRDD 4a9e90c [Patrick Wendell] EXPERIMENTAL API --> EXPERIMENTAL c581dce [Patrick Wendell] Changes after building against Shark. 8452309 [Patrick Wendell] Style fixes 1ed27d2 [Patrick Wendell] Formatting and coloring of badges cd7a465 [Patrick Wendell] Code review feedback 2f706f1 [Patrick Wendell] Don't use floats 542a736 [Patrick Wendell] Small fixes cf23ec6 [Patrick Wendell] Marking GraphX as alpha d86818e [Patrick Wendell] Another naming change 5a76ed6 [Patrick Wendell] More visiblity clean-up 42c1f09 [Patrick Wendell] Using better labels 9d48cbf [Patrick Wendell] Initial pass
liancheng
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Apr 17, 2014
This pull request adds support to Spark for working with structured data using a simple SQL dialect, HiveQL and a Scala Query DSL. *This is being contributed as a new __alpha component__ to Spark and does not modify Spark core or other components.* The code is broken into three primary components: - Catalyst (sql/catalyst) - An implementation-agnostic framework for manipulating trees of relational operators and expressions. - Execution (sql/core) - A query planner / execution engine for translating Catalyst’s logical query plans into Spark RDDs. This component also includes a new public interface, SqlContext, that allows users to execute SQL or structured scala queries against existing RDDs and Parquet files. - Hive Metastore Support (sql/hive) - An extension of SqlContext called HiveContext that allows users to write queries using a subset of HiveQL and access data from a Hive Metastore using Hive SerDes. There are also wrappers that allows users to run queries that include Hive UDFs, UDAFs, and UDTFs. A more complete design of this new component can be found in [the associated JIRA](https://spark-project.atlassian.net/browse/SPARK-1251). [An updated version of the Spark documentation, including API Docs for all three sub-components,](http://people.apache.org/~pwendell/catalyst-docs/sql-programming-guide.html) is also available for review. With this PR comes support for inferring the schema of existing RDDs that contain case classes. Using this information, developers can now express structured queries that are automatically compiled into RDD operations. ```scala // Define the schema using a case class. case class Person(name: String, age: Int) val people: RDD[Person] = sc.textFile("people.txt").map(_.split(",")).map(p => Person(p(0), p(1).toInt)) // The following is the same as 'SELECT name FROM people WHERE age >= 10 && age <= 19' val teenagers = people.where('age >= 10).where('age <= 19).select('name).toRdd ``` RDDs can also be registered as Tables, allowing SQL queries to be written over them. ```scala people.registerAsTable("people") val teenagers = sql("SELECT name FROM people WHERE age >= 10 && age <= 19") ``` The results of queries are themselves RDDs and support standard RDD operations: ```scala teenagers.map(t => "Name: " + t(0)).collect().foreach(println) ``` Finally, with the optional Hive support, users can read and write data located in existing Apache Hive deployments using HiveQL. ```scala sql("CREATE TABLE IF NOT EXISTS src (key INT, value STRING)") sql("LOAD DATA LOCAL INPATH 'src/main/resources/kv1.txt' INTO TABLE src") // Queries are expressed in HiveQL sql("SELECT key, value FROM src").collect().foreach(println) ``` ## Relationship to Shark Unlike Shark, Spark SQL does not act as a drop in replacement for Hive or the HiveServer. Instead this new feature is intended to make it easier for Spark developers to run queries over structured data, using either SQL or the query DSL. After this sub-project graduates from Alpha status it will likely become a new optimizer/backend for the Shark project. Author: Michael Armbrust <[email protected]> Author: Yin Huai <[email protected]> Author: Reynold Xin <[email protected]> Author: Lian, Cheng <[email protected]> Author: Andre Schumacher <[email protected]> Author: Yin Huai <[email protected]> Author: Timothy Chen <[email protected]> Author: Cheng Lian <[email protected]> Author: Timothy Chen <[email protected]> Author: Henry Cook <[email protected]> Author: Mark Hamstra <[email protected]> Closes #146 from marmbrus/catalyst and squashes the following commits: 458bd1b [Michael Armbrust] Update people.txt 0d638c3 [Michael Armbrust] Typo fix from @ash211. bdab185 [Michael Armbrust] Address another round of comments: * Doc examples can now copy/paste into spark-shell. * SQLContext is serializable * Minor parser bugs fixed * Self-joins of RDDs now handled correctly. * Removed deprecated examples * Removed deprecated parquet docs * Made more of the API private * Copied all the DSLQuery tests and rewrote them as SQLQueryTests 778299a [Michael Armbrust] Fix some old links to spark-project.org fead0b6 [Michael Armbrust] Create a new RDD type, SchemaRDD, that is now the return type for all SQL operations. This improves the old API by reducing the number of implicits that are required, and avoids throwing away schema information when returning an RDD to the user. This change also makes it slightly less verbose to run language integrated queries. fee847b [Michael Armbrust] Merge remote-tracking branch 'origin/master' into catalyst, integrating changes to serialization for ShuffledRDD. 48a99bc [Michael Armbrust] Address first round of feedback. 461581c [Michael Armbrust] Blacklist test that depends on JVM specific rounding behaviour adcf1a4 [Henry Cook] Update sql-programming-guide.md 9dffbfa [Michael Armbrust] Style fixes. Add downloading of test cases to jenkins. 6978dd8 [Michael Armbrust] update docs, add apache license 1d0eb63 [Michael Armbrust] update changes with spark core e5e1d6b [Michael Armbrust] Remove travis configuration. c2efad6 [Michael Armbrust] First draft of SQL documentation. 013f62a [Michael Armbrust] Fix documentation / code style. c01470f [Michael Armbrust] Clean up example 2f22454 [Michael Armbrust] WIP: Parquet example. ce8073b [Michael Armbrust] clean up implicits. f7d992d [Michael Armbrust] Naming / spelling. 9eb0294 [Michael Armbrust] Bring expressions implicits into SqlContext. d2d9678 [Michael Armbrust] Make sure hive isn't in the assembly jar. Create a separate, optional Hive assembly that is used when present. 8b35e0a [Michael Armbrust] address feedback, work on DSL 5d71074 [Michael Armbrust] Merge pull request #62 from AndreSchumacher/parquet_file_fixes f93aa39 [Andre Schumacher] Better handling of path names in ParquetRelation 1a4bbd9 [Michael Armbrust] Merge pull request #60 from marmbrus/maven 3386e4f [Michael Armbrust] Merge pull request #58 from AndreSchumacher/parquet_fixes 3447c3e [Michael Armbrust] Don't override the metastore / warehouse in non-local/test hive context. 7233a74 [Michael Armbrust] initial support for maven builds f0ba39e [Michael Armbrust] Merge remote-tracking branch 'origin/master' into maven 7386a9f [Michael Armbrust] Initial example programs using spark sql. aeaef54 [Andre Schumacher] Removing unnecessary Row copying and reverting some changes to MutableRow 7ca4b4e [Andre Schumacher] Improving checks in Parquet tests 5bacdc0 [Andre Schumacher] Moving towards mutable rows inside ParquetRowSupport 54637ec [Andre Schumacher] First part of second round of code review feedback c2a658d [Michael Armbrust] Merge pull request #55 from marmbrus/mutableRows ba28849 [Michael Armbrust] code review comments. d994333 [Michael Armbrust] Remove copies before shuffle, this required changing the default shuffle serialization. 9049cf0 [Michael Armbrust] Extend MutablePair interface to support easy syntax for in-place updates. Also add a constructor so that it can be serialized out-of-the-box. 959bdf0 [Michael Armbrust] Don't silently swallow all KryoExceptions, only the one that indicates the end of a stream. d371393 [Michael Armbrust] Add a framework for dealing with mutable rows to reduce the number of object allocations that occur in the critical path. c9f8fb3 [Michael Armbrust] Merge pull request #53 from AndreSchumacher/parquet_support 3c3f962 [Michael Armbrust] Fix a bug due to array reuse. This will need to be revisited after we merge the mutable row PR. 7d0f13e [Michael Armbrust] Update parquet support with master. 9d419a6 [Michael Armbrust] Merge remote-tracking branch 'catalyst/catalystIntegration' into parquet_support 0040ae6 [Andre Schumacher] Feedback from code review 1ce01c7 [Michael Armbrust] Merge pull request #56 from liancheng/unapplySeqForRow 70e489d [Cheng Lian] Fixed a spelling typo 6d315bb [Cheng Lian] Added Row.unapplySeq to extract fields from a Row object. 8d5da5e [Michael Armbrust] modify compute-classpath.sh to include datanucleus jars explicitly 99e61fb [Michael Armbrust] Merge pull request #51 from marmbrus/expressionEval 7b9d142 [Michael Armbrust] Update travis to increase permgen size. da9afbd [Michael Armbrust] Add byte wrappers for hive UDFS. 6fdefe6 [Michael Armbrust] Port sbt improvements from master. 296fe50 [Michael Armbrust] Address review feedback. d7fbc3a [Michael Armbrust] Several performance enhancements and simplifications of the expression evaluation framework. 3bda72d [Andre Schumacher] Adding license banner to new files 3ac9eb0 [Andre Schumacher] Rebasing to new main branch c863bed [Andre Schumacher] Codestyle checks 61e3bfb [Andre Schumacher] Adding WriteToFile operator and rewriting ParquetQuerySuite 3321195 [Andre Schumacher] Fixing one import in ParquetQueryTests.scala 3a0a552 [Andre Schumacher] Reorganizing Parquet table operations 18fdc44 [Andre Schumacher] Reworking Parquet metadata in relation and adding CREATE TABLE AS for Parquet tables 75262ee [Andre Schumacher] Integrating operations on Parquet files into SharkStrategies f347273 [Andre Schumacher] Adding ParquetMetaData extraction, fixing schema projection 6a6bf98 [Andre Schumacher] Added column projections to ParquetTableScan 0f17d7b [Andre Schumacher] Rewriting ParquetRelation tests with RowWriteSupport a11e364 [Andre Schumacher] Adding Parquet RowWriteSupport 6ad05b3 [Andre Schumacher] Moving ParquetRelation to spark.sql core eb0e521 [Andre Schumacher] Fixing package names and other problems that came up after the rebase 99a9209 [Andre Schumacher] Expanding ParquetQueryTests to cover all primitive types b33e47e [Andre Schumacher] First commit of Parquet import of primitive column types c334386 [Michael Armbrust] Initial support for generating schema's based on case classes. 608a29e [Michael Armbrust] Add hive as a repl dependency 7413ac2 [Michael Armbrust] make test downloading quieter. 4d57d0e [Michael Armbrust] Fix test execution on travis. 5f2963c [Michael Armbrust] naming and continuous compilation fixes. f5e7492 [Michael Armbrust] Add Apache license. Make naming more consistent. 3ac9416 [Michael Armbrust] Merge support for working with schema-ed RDDs using catalyst in as a spark subproject. 2225431 [Michael Armbrust] Merge pull request #48 from marmbrus/minorFixes d393d2a [Michael Armbrust] Review Comments: Add comment to map that adds a sub query. 24eaa79 [Michael Armbrust] fix > 100 chars 6e04e5b [Michael Armbrust] Add insertIntoTable to the DSL. df88f01 [Michael Armbrust] add a simple test for aggregation 18a861b [Michael Armbrust] Correctly convert nested products into nested rows when turning scala data into catalyst data. b922511 [Michael Armbrust] Fix insertion of nested types into hive tables. 5fe7de4 [Michael Armbrust] Move table creation out of rule into a separate function. a430895 [Michael Armbrust] Planning for logical Repartition operators. 532dd37 [Michael Armbrust] Allow the local warehouse path to be specified. 4905b2b [Michael Armbrust] Add more efficient TopK that avoids global sort for logical Sort => StopAfter. 8c01c24 [Michael Armbrust] Move definition of Row out of execution to top level sql package. c9116a6 [Michael Armbrust] �Add combiner to avoid NPE when spark performs external aggregation. 29effad [Michael Armbrust] Include alias in attributes that are produced by overridden tables. 9990ec7 [Michael Armbrust] Merge pull request #28 from liancheng/columnPruning f22df3a [Michael Armbrust] Merge pull request #37 from yhuai/SerDe cf4db59 [Lian, Cheng] Added golden answers for PruningSuite 54f165b [Lian, Cheng] Fixed spelling typo in two golden answer file names 2682f72 [Lian, Cheng] Merge remote-tracking branch 'origin/master' into columnPruning c5a4fab [Lian, Cheng] Merge branch 'master' into columnPruning f670c8c [Yin Huai] Throw a NotImplementedError for not supported clauses in a CTAS query. 128a9f8 [Yin Huai] Minor changes. 017872c [Yin Huai] Remove stats20 from whitelist. a1a4776 [Yin Huai] Update comments. feb022c [Yin Huai] Partitioning key should be case insensitive. 555fb1d [Yin Huai] Correctly set the extension for a text file. d00260b [Yin Huai] Strips backticks from partition keys. 334aace [Yin Huai] New golden files. a40d6d6 [Yin Huai] Loading the static partition specified in a INSERT INTO/OVERWRITE query. 428aff5 [Yin Huai] Distinguish `INSERT INTO` and `INSERT OVERWRITE`. eea75c5 [Yin Huai] Correctly set codec. 45ffb86 [Yin Huai] Merge remote-tracking branch 'upstream/master' into SerDeNew e089627 [Yin Huai] Code style. 563bb22 [Yin Huai] Set compression info in FileSinkDesc. 35c9a8a [Michael Armbrust] Merge pull request #46 from marmbrus/reviewFeedback bdab5ed [Yin Huai] Add a TODO for loading data into partitioned tables. 5495fab [Yin Huai] Remove cloneRecords which is no longer needed. 1596e1b [Yin Huai] Cleanup imports to make IntelliJ happy. 3bb272d [Michael Armbrust] move org.apache.spark.sql package.scala to the correct location. 8506c17 [Michael Armbrust] Address review feedback. 3cb4f2e [Michael Armbrust] Merge pull request #45 from tnachen/master 9ad474d [Michael Armbrust] Merge pull request #44 from marmbrus/sampling 566fd66 [Timothy Chen] Whitelist tests and add support for Binary type 69adf72 [Yin Huai] Set cloneRecords to false. a9c3188 [Timothy Chen] Fix udaf struct return 346f828 [Yin Huai] Move SharkHadoopWriter to the correct location. 59e37a3 [Yin Huai] Merge remote-tracking branch 'upstream/master' into SerDeNew ed3a1d1 [Yin Huai] Load data directly into Hive. 7f206b5 [Michael Armbrust] Add support for hive TABLESAMPLE PERCENT. b6de691 [Michael Armbrust] Merge pull request #43 from liancheng/fixMakefile 1f6260d [Lian, Cheng] Fixed package name and test suite name in Makefile 5ae010f [Michael Armbrust] Merge pull request #42 from markhamstra/non-ascii 678341a [Mark Hamstra] Replaced non-ascii text 887f928 [Yin Huai] Merge remote-tracking branch 'upstream/master' into SerDeNew 1f7d00a [Reynold Xin] Merge pull request #41 from marmbrus/splitComponents 7588a57 [Michael Armbrust] Break into 3 major components and move everything into the org.apache.spark.sql package. bc9a12c [Michael Armbrust] Move hive test files. 5720d2b [Lian, Cheng] Fixed comment typo f0c3742 [Lian, Cheng] Refactored PhysicalOperation f235914 [Lian, Cheng] Test case udf_regex and udf_like need BooleanWritable registered cf691df [Lian, Cheng] Added the PhysicalOperation to generalize ColumnPrunings 2407a21 [Lian, Cheng] Added optimized logical plan to debugging output a7ad058 [Michael Armbrust] Merge pull request #40 from marmbrus/includeGoldens 9329820 [Michael Armbrust] add golden answer files to repository dce0593 [Michael Armbrust] move golden answer to the source code directory. 964368f [Michael Armbrust] Merge pull request #39 from marmbrus/lateralView 7785ee6 [Michael Armbrust] Tighten visibility based on comments. 341116c [Michael Armbrust] address comments. 0e6c1d7 [Reynold Xin] Merge pull request #38 from yhuai/parseDBNameInCTAS 2897deb [Michael Armbrust] fix scaladoc 7123225 [Yin Huai] Correctly parse the db name and table name in INSERT queries. b376d15 [Michael Armbrust] fix newlines at EOF 5cc367c [Michael Armbrust] use berkeley instead of cloudbees ff5ea3f [Michael Armbrust] new golden db92adc [Michael Armbrust] more tests passing. clean up logging. 740febb [Michael Armbrust] Tests for tgfs. 0ce61b0 [Michael Armbrust] Docs for GenericHiveUdtf. ba8897f [Michael Armbrust] Merge remote-tracking branch 'yin/parseDBNameInCTAS' into lateralView dd00b7e [Michael Armbrust] initial implementation of generators. ea76cf9 [Michael Armbrust] Add NoRelation to planner. bea4b7f [Michael Armbrust] Add SumDistinct. 016b489 [Michael Armbrust] fix typo. acb9566 [Michael Armbrust] Correctly type attributes of CTAS. 8841eb8 [Michael Armbrust] Rename Transform -> ScriptTransformation. 02ff8e4 [Yin Huai] Correctly parse the db name and table name in a CTAS query. 5e4d9b4 [Michael Armbrust] Merge pull request #35 from marmbrus/smallFixes 5479066 [Reynold Xin] Merge pull request #36 from marmbrus/partialAgg 8017afb [Michael Armbrust] fix copy paste error. dc6353b [Michael Armbrust] turn off deprecation cab1a84 [Michael Armbrust] Fix PartialAggregate inheritance. 883006d [Michael Armbrust] improve tests. 32b615b [Michael Armbrust] add override to asPartial. e1999f9 [Yin Huai] Use Deserializer and Serializer instead of AbstractSerDe. f94345c [Michael Armbrust] fix doc link d8cb805 [Michael Armbrust] Implement partial aggregation. ccdb07a [Michael Armbrust] Fix bug where averages of strings are turned into sums of strings. Remove a blank line. b4be6a5 [Michael Armbrust] better logging when applying rules. 67128b8 [Reynold Xin] Merge pull request #30 from marmbrus/complex cb57459 [Michael Armbrust] blacklist machine specific test. 2f27604 [Michael Armbrust] Address comments / style errors. 389525d [Michael Armbrust] update golden, blacklist mr. e3c10bd [Michael Armbrust] update whitelist. 44d343c [Michael Armbrust] Merge remote-tracking branch 'databricks/master' into complex 42ec4af [Michael Armbrust] improve complex type support in hive udfs/udafs. ab5bff3 [Michael Armbrust] Support for get item of map types. 1679554 [Michael Armbrust] add toString for if and IS NOT NULL. ab9a131 [Michael Armbrust] when UDFs fail they should return null. 25288d0 [Michael Armbrust] Implement [] for arrays and maps. e7933e9 [Michael Armbrust] fix casting bug when working with fractional expressions. 010accb [Michael Armbrust] add tinyint to metastore type parser. 7a0f543 [Michael Armbrust] Avoid propagating types from unresolved nodes. ac9d7de [Michael Armbrust] Resolve *s in Transform clauses. 692a477 [Michael Armbrust] Support for wrapping arrays to be written into hive tables. 92e4158 [Reynold Xin] Merge pull request #32 from marmbrus/tooManyProjects 9c06778 [Michael Armbrust] fix serialization issues, add JavaStringObjectInspector. 72a003d [Michael Armbrust] revert regex change 7661b6c [Michael Armbrust] blacklist machines specific tests aa430e7 [Michael Armbrust] Update .travis.yml e4def6b [Michael Armbrust] set dataType for HiveGenericUdfs. 5e54aa6 [Michael Armbrust] quotes for struct field names. bbec500 [Michael Armbrust] update test coverage, new golden 3734a94 [Michael Armbrust] only quote string types. 3f9e519 [Michael Armbrust] use names w/ boolean args 5b3d2c8 [Michael Armbrust] implement distinct. 5b33216 [Michael Armbrust] work on decimal support. 2c6deb3 [Michael Armbrust] improve printing compatibility. 35a70fb [Michael Armbrust] multi-letter field names. a9388fb [Michael Armbrust] printing for map types. c3feda7 [Michael Armbrust] use toArray. c654f19 [Michael Armbrust] Support for list and maps in hive table scan. cf8d992 [Michael Armbrust] Use built in functions for creating temp directory. 1579eec [Michael Armbrust] Only cast unresolved inserts. 6420c7c [Michael Armbrust] Memoize the ordinal in the GetField expression. da7ae9d [Michael Armbrust] Add boolean writable that was breaking udf_regexp test. Not sure how this was passing before... 6709441 [Michael Armbrust] Evaluation for accessing nested fields. dc6463a [Michael Armbrust] Support for resolving access to nested fields using "." notation. d670e41 [Michael Armbrust] Print nested fields like hive does. efa7217 [Michael Armbrust] Support for reading structs in HiveTableScan. 9c22b4e [Michael Armbrust] Support for parsing nested types. 82163e3 [Michael Armbrust] special case handling of partitionKeys when casting insert into tables ea6f37f [Michael Armbrust] fix style. 7845364 [Michael Armbrust] deactivate concurrent test. b649c20 [Michael Armbrust] fix test logging / caching. 1590568 [Michael Armbrust] add log4j.properties 19bfd74 [Michael Armbrust] store hive output in circular buffer dfb67aa [Michael Armbrust] add test case cb775ac [Michael Armbrust] get rid of SharkContext singleton 2de89d0 [Michael Armbrust] Merge pull request #13 from tnachen/master 63003e9 [Michael Armbrust] Fix spacing. 41b41f3 [Michael Armbrust] Only cast unresolved inserts. 6eb5960 [Michael Armbrust] Merge remote-tracking branch 'databricks/master' into udafs 5b7afd8 [Michael Armbrust] Merge pull request #10 from yhuai/exchangeOperator b1151a8 [Timothy Chen] Fix load data regex 8e0931f [Michael Armbrust] Cast to avoid using deprecated hive API. e079f2b [Timothy Chen] Add GenericUDAF wrapper and HiveUDAFFunction 45b334b [Yin Huai] fix comments 235cbb4 [Yin Huai] Merge remote-tracking branch 'upstream/master' into exchangeOperator fc67b50 [Yin Huai] Check for a Sort operator with the global flag set instead of an Exchange operator with a RangePartitioning. 6015f93 [Michael Armbrust] Merge pull request #29 from rxin/style 271e483 [Michael Armbrust] Update build status icon. d3a3d48 [Michael Armbrust] add testing to travis 807b2d7 [Michael Armbrust] check style and publish docs with travis d20b565 [Michael Armbrust] fix if style bce024d [Michael Armbrust] Merge remote-tracking branch 'databricks/master' into style Disable if brace checking as it errors in single line functional cases unlike the style guide. d91e276 [Michael Armbrust] Remove dependence on HIVE_HOME for running tests. This was done by moving all the hive query test (from branch-0.12) and data files into src/test/hive. These are used by default when HIVE_HOME is not set. f47c2f6 [Yin Huai] set outputPartitioning in BroadcastNestedLoopJoin 41bbee6 [Yin Huai] Merge remote-tracking branch 'upstream/master' into exchangeOperator 7e24436 [Reynold Xin] Removed dependency on JDK 7 (nio.file). 5c1e600 [Reynold Xin] Added hash code implementation for AttributeReference 7213a2c [Reynold Xin] style fix for Hive.scala. 08e4d05 [Reynold Xin] First round of style cleanup. 605255e [Reynold Xin] Added scalastyle checker. 61e729c [Lian, Cheng] Added ColumnPrunings strategy and test cases 2486fb7 [Lian, Cheng] Fixed spelling 8ee41be [Lian, Cheng] Minor refactoring ebb56fa [Michael Armbrust] add travis config 4c89d6e [Reynold Xin] Merge pull request #27 from marmbrus/moreTests d4f539a [Michael Armbrust] blacklist mr and user specific tests. 677eb07 [Michael Armbrust] Update test whitelist. 5dab0bc [Michael Armbrust] Merge pull request #26 from liancheng/serdeAndPartitionPruning c263c84 [Michael Armbrust] Only push predicates into partitioned table scans. ab77882 [Michael Armbrust] upgrade spark to RC5. c98ede5 [Lian, Cheng] Response to comments from @marmbrus 83d4520 [Yin Huai] marmbrus's comments 70994a3 [Lian, Cheng] Revert unnecessary Scaladoc changes 9ebff47 [Yin Huai] remove unnecessary .toSeq e811d1a [Yin Huai] markhamstra's comments 4802f69 [Yin Huai] The outputPartitioning of a UnaryNode inherits its child's outputPartitioning by default. Also, update the logic in AddExchange to avoid unnecessary shuffling operations. 040fbdf [Yin Huai] AddExchange is the only place to add Exchange operators. 9fb357a [Yin Huai] use getSpecifiedDistribution to create Distribution. ClusteredDistribution and OrderedDistribution do not take Nil as inptu expressions. e9347fc [Michael Armbrust] Remove broken scaladoc links. 99c6707 [Michael Armbrust] upgrade spark 57799ad [Lian, Cheng] Added special treat for HiveVarchar in InsertIntoHiveTable cb49af0 [Lian, Cheng] Fixed Scaladoc links 4e5e4d4 [Lian, Cheng] Added PreInsertionCasts to do necessary casting before insertion 111ffdc [Lian, Cheng] More comments and minor reformatting 9e0d840 [Lian, Cheng] Added partition pruning optimization 761bbb8 [Lian, Cheng] Generalized BindReferences to run against any query plan 04eb5da [Yin Huai] Merge remote-tracking branch 'upstream/master' into exchangeOperator 9dd3b26 [Michael Armbrust] Fix scaladoc. 6f44cac [Lian, Cheng] Made TableReader & HadoopTableReader private to catalyst 7c92a41 [Lian, Cheng] Added Hive SerDe support ce5fdd6 [Yin Huai] Merge remote-tracking branch 'upstream/master' into exchangeOperator 2957f31 [Yin Huai] addressed comments on PR 907db68 [Michael Armbrust] Space after while. 04573a0 [Reynold Xin] Merge pull request #24 from marmbrus/binaryCasts 4e50679 [Reynold Xin] Merge pull request #25 from marmbrus/rowOrderingWhile 5bc1dc2 [Yin Huai] Merge remote-tracking branch 'upstream/master' into exchangeOperator be1fff7 [Michael Armbrust] Replace foreach with while in RowOrdering. Fixes #23 fd084a4 [Michael Armbrust] implement casts binary <=> string. 0b31176 [Michael Armbrust] Merge pull request #22 from rxin/type 548e479 [Yin Huai] merge master into exchangeOperator and fix code style 5b11db0 [Reynold Xin] Added Void to Boolean type widening. 9e3d989 [Reynold Xin] Made HiveTypeCoercion.WidenTypes more clear. 9bb1979 [Reynold Xin] Merge pull request #19 from marmbrus/variadicUnion a2beb38 [Michael Armbrust] Merge pull request #21 from liancheng/fixIssue20 b20a4d4 [Lian, Cheng] Fix issue #20 6d6cb58 [Michael Armbrust] add source links that point to github to the scala doc. 4285962 [Michael Armbrust] Remove temporary test cases 167162f [Michael Armbrust] more merge errors, cleanup. e170ccf [Michael Armbrust] Improve documentation and remove some spurious changes that were introduced by the merge. 6377d0b [Michael Armbrust] Drop empty files, fix if (). c0b0e60 [Michael Armbrust] cleanup broken doc links. 330a88b [Michael Armbrust] Fix bugs in AddExchange. 4f345f2 [Michael Armbrust] Remove SortKey, use RowOrdering. 043e296 [Michael Armbrust] Make physical union nodes variadic. ece15e1 [Michael Armbrust] update unit tests 5c89d2e [Michael Armbrust] Merge remote-tracking branch 'databricks/master' into exchangeOperator Fix deprecated use of combineValuesByKey. Get rid of test where the answer is dependent on the plan execution width. 9804eb5 [Michael Armbrust] upgrade spark 053a371 [Michael Armbrust] Merge pull request #15 from marmbrus/orderedRow 5ab18be [Michael Armbrust] Merge remote-tracking branch 'databricks/master' into orderedRow ca2ff68 [Michael Armbrust] Merge pull request #17 from marmbrus/unionTypes bf9161c [Michael Armbrust] Merge pull request #18 from marmbrus/noSparkAgg 563053f [Michael Armbrust] Address @rxin's comments. 6537c66 [Michael Armbrust] Address @rxin's comments. 2a76fc6 [Michael Armbrust] add notes from @rxin. 685bfa1 [Michael Armbrust] fix spelling 69ed98f [Michael Armbrust] Output a single row for empty Aggregations with no grouping expressions. 7859a86 [Michael Armbrust] Remove SparkAggregate. Its kinda broken and breaks RDD lineage. fc22e01 [Michael Armbrust] whitelist newly passing union test. 3f547b8 [Michael Armbrust] Add support for widening types in unions. 53b95f8 [Michael Armbrust] coercion should not occur until children are resolved. b892e32 [Michael Armbrust] Union is not resolved until the types match up. 95ab382 [Michael Armbrust] Use resolved instead of custom function. This is better because some nodes override the notion of resolved. 81a109d [Michael Armbrust] fix link. f143f61 [Michael Armbrust] Implement sampling. Fixes a flaky test where the JVM notices that RAND as a Comparison method "violates its general contract!" 6cd442b [Michael Armbrust] Use numPartitions variable, fix grammar. c800798 [Michael Armbrust] Add build status icon. 0cf5a75 [Michael Armbrust] Merge pull request #16 from marmbrus/filterPushDown 05d3a0d [Michael Armbrust] Refactor to avoid serializing ordering details with every row. f2fdd77 [Michael Armbrust] fix required distribtion for aggregate. 658866e [Michael Armbrust] Pull back in changes made by @yhuai eliminating CoGroupedLocallyRDD.scala 583a337 [Michael Armbrust] break apart distribution and partitioning. e8d41a9 [Michael Armbrust] Merge remote-tracking branch 'yin/exchangeOperator' into exchangeOperator 0ff8be7 [Michael Armbrust] Cleanup spurious changes and fix doc links. 73c70de [Yin Huai] add a first set of unit tests for data properties. fbfa437 [Michael Armbrust] Merge remote-tracking branch 'databricks/master' into filterPushDown Minor doc improvements. 2b9d80f [Yin Huai] initial commit of adding exchange operators to physical plans. fcbc03b [Michael Armbrust] Fix if (). 7b9080c [Michael Armbrust] Create OrderedRow class to allow ordering to be used by multiple operators. b4adb0f [Michael Armbrust] Merge pull request #14 from marmbrus/castingAndTypes b2a1ec5 [Michael Armbrust] add comment on how using numeric implicitly complicates spark serialization. e286d20 [Michael Armbrust] address code review comments. 80d0681 [Michael Armbrust] fix scaladoc links. de0c248 [Michael Armbrust] Print the executed plan in SharkQuery toString. 3413e61 [Michael Armbrust] Add mapChildren and withNewChildren methods to TreeNode. 404d552 [Michael Armbrust] Better exception when unbound attributes make it to evaluation. fb84ae4 [Michael Armbrust] Refactor DataProperty into Distribution. 2abb0bc [Michael Armbrust] better debug messages, use exists. 098dfc4 [Michael Armbrust] Implement Long sorting again. 60f3a9a [Michael Armbrust] More aggregate functions out of the aggregate class to make things more readable. a1ef62e [Michael Armbrust] Print the executed plan in SharkQuery toString. dfce426 [Michael Armbrust] Add mapChildren and withNewChildren methods to TreeNode. 037a2ed [Michael Armbrust] Better exception when unbound attributes make it to evaluation. ec90620 [Michael Armbrust] Support for Sets as arguments to TreeNode classes. b21f803 [Michael Armbrust] Merge pull request #11 from marmbrus/goldenGen 83adb9d [Yin Huai] add DataProperty 5a26292 [Michael Armbrust] Rules to bring casting more inline with Hive semantics. f0e0161 [Michael Armbrust] Move numeric types into DataTypes simplifying evaluator. This can probably also be use for codegen... 6d2924d [Michael Armbrust] add support for If. Not integrated in HiveQL yet. ccc4dbf [Michael Armbrust] Add optimization rule to simplify casts. 058ec15 [Michael Armbrust] handle more writeables. ffa9f25 [Michael Armbrust] blacklist some more MR tests. aa2239c [Michael Armbrust] filter test lines containing Owner: f71a325 [Michael Armbrust] Update golden jar. a3003ae [Michael Armbrust] Update makefile to use better sharding support. 568d150 [Michael Armbrust] Updates to white/blacklist. 8351f25 [Michael Armbrust] Add an ignored test to remind us we don't do empty aggregations right. c4104ec [Michael Armbrust] Numerous improvements to testing infrastructure. See comments for details. 09c6300 [Michael Armbrust] Add nullability information to StructFields. 5460b2d [Michael Armbrust] load srcpart by default. 3695141 [Michael Armbrust] Lots of parser improvements. 965ac9a [Michael Armbrust] Add expressions that allow access into complex types. 3ba53c9 [Michael Armbrust] Output type suffixes on AttributeReferences. 8777489 [Michael Armbrust] Initial support for operators that allow the user to specify partitioning. e57f97a [Michael Armbrust] more decimal/null support. e1440ed [Michael Armbrust] Initial support for function specific type conversions. 1814ed3 [Michael Armbrust] use childrenResolved function. f2ec57e [Michael Armbrust] Begin supporting decimal. 6924e6e [Michael Armbrust] Handle NullTypes when resolving HiveUDFs 7fcfa8a [Michael Armbrust] Initial support for parsing unspecified partition parameters. d0124f3 [Michael Armbrust] Correctly type null literals. b65626e [Michael Armbrust] Initial support for parsing BigDecimal. a90efda [Michael Armbrust] utility function for outputing string stacktraces. 7102f33 [Michael Armbrust] methods with side-effects should use (). 3ccaef7 [Michael Armbrust] add renaming TODO. bc282c7 [Michael Armbrust] fix bug in getNodeNumbered c8e89d5 [Michael Armbrust] memoize inputSet calculation. 6aefa46 [Michael Armbrust] Skip folding literals. a72e540 [Michael Armbrust] Add IN operator. 04f885b [Michael Armbrust] literals are only non-nullable if they are not null. 35d2948 [Michael Armbrust] correctly order partition and normal attributes in hive relation output. 12fd52d [Michael Armbrust] support for sorting longs. 0606520 [Michael Armbrust] drop old comment. 859200a [Michael Armbrust] support for reading more types from the metastore. 1fedd18 [Michael Armbrust] coercion from null to numeric types 71e902d [Michael Armbrust] fix test cases. cc06b6c [Michael Armbrust] Merge remote-tracking branch 'databricks/master' into interviewAnswer 8a8b521 [Reynold Xin] Merge pull request #8 from marmbrus/testImprovment 86355a6 [Michael Armbrust] throw error if there are unexpected join clauses. c5842d2 [Michael Armbrust] don't throw an error when a select clause outputs multiple copies of the same attribute. 0e975ea [Michael Armbrust] parse bucket sampling as percentage sampling a92919d [Michael Armbrust] add alter view as to native commands f58d5a5 [Michael Armbrust] support for parsing SELECT DISTINCT f0faa26 [Michael Armbrust] add sample and distinct operators. ef7b943 [Michael Armbrust] add metastore support for float e9f4588 [Michael Armbrust] fix > 100 char. 755b229 [Michael Armbrust] blacklist some ddl tests. 9ae740a [Michael Armbrust] blacklist more tests that require MR. 4cfc11a [Michael Armbrust] more test coverage. 0d9d56a [Michael Armbrust] add more native commands to parser 78d730d [Michael Armbrust] Load src test table on RESET. 8364ec2 [Michael Armbrust] whitelist all possible partition values. b01468d [Michael Armbrust] support path rewrites when the query begins with a comment. 4c6b454 [Michael Armbrust] add option for recomputing the cached golden answer when tests fail. 4c5fb0f [Michael Armbrust] makefile target for building new whitelist. 4b6fed8 [Michael Armbrust] support for parsing both DESTINATION and INSERT_INTO. 516481c [Michael Armbrust] Ignore requests to explain native commands. 68aa2e6 [Michael Armbrust] Stronger type for Token extractor. ca4ea26 [Michael Armbrust] Support for parsing UDF(*). 1aafea3 [Michael Armbrust] Configure partition whitelist in TestShark reset. 9627616 [Michael Armbrust] Use current database as default database. 9b02b44 [Michael Armbrust] Fix spelling error. Add failFast mode. 6f64cee [Michael Armbrust] don't line wrap string literal eafaeed [Michael Armbrust] add type documentation f54c94c [Michael Armbrust] make golden answers file a test dependency 5362365 [Michael Armbrust] push conditions into join 0d2388b [Michael Armbrust] Point at databricks hosted scaladoc. 73b29cd [Michael Armbrust] fix bad casting 9aa06c5 [Michael Armbrust] Merge pull request #7 from marmbrus/docFixes 7eff191 [Michael Armbrust] link all the expression names. 83227e4 [Michael Armbrust] fix scaladoc list syntax, add docs for some rules 9de6b74 [Michael Armbrust] fix language feature and deprecation warnings. 0b1960a [Michael Armbrust] Fix broken scala doc links / warnings. b1acb36 [Michael Armbrust] Merge pull request #3 from yhuai/evalauteLiteralsInExpressions 01c00c2 [Michael Armbrust] new golden 5c14857 [Yin Huai] Merge remote-tracking branch 'upstream/master' into evalauteLiteralsInExpressions b749b51 [Michael Armbrust] Merge pull request #5 from marmbrus/testCaching 66adceb [Michael Armbrust] Merge pull request #6 from marmbrus/joinWork 1a393da [Yin Huai] folded -> foldable 1e964ea [Yin Huai] update a43d41c [Michael Armbrust] more tests passing! 8ca38d0 [Michael Armbrust] begin support for varchar / binary types. ab8bbd1 [Michael Armbrust] parsing % operator c16c8b5 [Michael Armbrust] case insensitive checking for hooks in tests. 3a90a5f [Michael Armbrust] simpler output when running a single test from the commandline. 5332fee [Yin Huai] Merge remote-tracking branch 'upstream/master' into evalauteLiteralsInExpressions 367fb9e [Yin Huai] update 0cd5cc6 [Michael Armbrust] add BIGINT cast parsing 61b266f [Michael Armbrust] comment for eliminate subqueries. d72a5a2 [Michael Armbrust] add long to literal factory object. b3bd15f [Michael Armbrust] blacklist more mr requiring tests. e06fd38 [Michael Armbrust] black list map reduce tests. 8e7ce30 [Michael Armbrust] blacklist some env specific tests. 6250cbd [Michael Armbrust] Do not exit on test failure b22b220 [Michael Armbrust] also look for cached hive test answers on the classpath. b6e4899 [Yin Huai] formatting e75c90d [Reynold Xin] Merge pull request #4 from marmbrus/hive12 5fabbec [Michael Armbrust] ignore partitioned scan test. scan seems to be working but there is some error about the table already existing? 9e190f5 [Michael Armbrust] drop unneeded () 68b58c1 [Michael Armbrust] drop a few more tests. b0aa400 [Michael Armbrust] update whitelist. c99012c [Michael Armbrust] skip tests with hooks db00ebf [Michael Armbrust] more types for hive udfs dbc3678 [Michael Armbrust] update ghpages repo 138f53d [Yin Huai] addressed comments and added a space after a space after the defining keyword of every control structure. 6f954ee [Michael Armbrust] export the hadoop classpath when starting sbt, required to invoke hive during tests. 46bf41b [Michael Armbrust] add a makefile for priming the test answer cache in parallel. usage: "make -j 8 -i" 8d47ed4 [Yin Huai] comment 2795f05 [Yin Huai] comment e003728 [Yin Huai] move OptimizerSuite to the package of catalyst.optimizer 2941d3a [Yin Huai] Merge remote-tracking branch 'upstream/master' into evalauteLiteralsInExpressions 0bd1688 [Yin Huai] update 6a7bd75 [Michael Armbrust] fix partition column delimiter configuration. e942da1 [Michael Armbrust] Begin upgrade to Hive 0.12.0. b8cd7e3 [Michael Armbrust] Merge pull request #7 from rxin/moreclean 52864da [Reynold Xin] Added executeCollect method to SharkPlan. f0e1cbf [Reynold Xin] Added resolved lazy val to LogicalPlan. b367e36 [Reynold Xin] Replaced the use of ??? with UnsupportedOperationException. 38124bd [Yin Huai] formatting 2924468 [Yin Huai] add two tests for testing pre-order and post-order tree traversal, respectively 555d839 [Reynold Xin] More cleaning ... d48d0e1 [Reynold Xin] Code review feedback. aa2e694 [Yin Huai] Merge remote-tracking branch 'upstream/master' into evalauteLiteralsInExpressions 5c421ac [Reynold Xin] Imported SharkEnv, SharkContext, and HadoopTableReader to remove Shark dependency. 479e055 [Reynold Xin] A set of minor changes, including: - import order - limit some lines to 100 character wide - inline code comment - more scaladocs - minor spacing (i.e. add a space after if) da16e45 [Reynold Xin] Merge pull request #3 from rxin/packagename e36caf5 [Reynold Xin] Renamed Rule.name to Rule.ruleName since name is used too frequently in the code base and is shadowed often by local scope. 72426ed [Reynold Xin] Rename shark2 package to execution. 0892153 [Reynold Xin] Merge pull request #2 from rxin/packagename e58304a [Reynold Xin] Merge pull request #1 from rxin/gitignore 3f9fee1 [Michael Armbrust] rewrite push filter through join optimization. c6527f5 [Reynold Xin] Moved the test src files into the catalyst directory. c9777d8 [Reynold Xin] Put all source files in a catalyst directory. 019ea74 [Reynold Xin] Updated .gitignore to include IntelliJ files. 80ca4be [Timothy Chen] Address comments 0079392 [Michael Armbrust] support for multiple insert commands in a single query 75b5a01 [Michael Armbrust] remove space. 4283400 [Timothy Chen] Add limited predicate push down e547e50 [Michael Armbrust] implement First. e77c9b6 [Michael Armbrust] more work on unique join. c795e06 [Michael Armbrust] improve star expansion a26494e [Michael Armbrust] allow aliases to have qualifiers d078333 [Michael Armbrust] remove extra space a75c023 [Michael Armbrust] implement Coalesce 3a018b6 [Michael Armbrust] fix up docs. ab6f67d [Michael Armbrust] import the string "null" as actual null. 5377c04 [Michael Armbrust] don't call dataType until checking if children are resolved. 191ce3e [Michael Armbrust] analyze rewrite test query. 60b1526 [Michael Armbrust] don't call dataType until checking if children are resolved. 2ab5a32 [Michael Armbrust] stop using uberjar as it has its own set of issues. e42f75a [Michael Armbrust] Merge remote-tracking branch 'origin/master' into HEAD c086a35 [Michael Armbrust] docs, spacing c4060e4 [Michael Armbrust] cleanup 3b85462 [Michael Armbrust] more tests passing bcfc8c5 [Michael Armbrust] start supporting partition attributes when inserting data. c944a95 [Michael Armbrust] First aggregate expression. 1e28311 [Michael Armbrust] make tests execute in alpha order again a287481 [Michael Armbrust] spelling 8492548 [Michael Armbrust] beginning of UNIQUEJOIN parsing. a6ab6c7 [Michael Armbrust] add != 4529594 [Michael Armbrust] draft of coalesce 70f253f [Michael Armbrust] more tests passing! 7349e7b [Michael Armbrust] initial support for test thrift table d3c9305 [Michael Armbrust] fix > 100 char line 93b64b0 [Michael Armbrust] load test tables that are args to "DESCRIBE" 06b2aba [Michael Armbrust] don't be case sensitive when fixing load paths 6355d0e [Michael Armbrust] match actual return type of count with expected cda43ab [Michael Armbrust] don't throw an exception when one of the join tables is empty. fd4b096 [Michael Armbrust] fix casing of null strings as well. 4632695 [Michael Armbrust] support for megastore bigint 67b88cf [Michael Armbrust] more verbose debugging of evaluation return types c680e0d [Michael Armbrust] Failed string => number conversion should return null. 2326be1 [Michael Armbrust] make getClauses case insensitive. dac2786 [Michael Armbrust] correctly handle null values when going from string to numeric types. 045ac4b [Yin Huai] Merge remote-tracking branch 'upstream/master' into evalauteLiteralsInExpressions fb5ddfd [Michael Armbrust] move ViewExamples to examples/ 83833e8 [Michael Armbrust] more tests passing! 47c98d6 [Michael Armbrust] add query tests for like and hash. 1724c16 [Michael Armbrust] clear lines that contain last updated times. cfd6bbc [Michael Armbrust] Quick skipping of tests that we can't even parse. 9b2642b [Michael Armbrust] make the blacklist support regexes 1d50af6 [Michael Armbrust] more datatypes, fix nonserializable instance variables in udfs 910e33e [Michael Armbrust] basic support for building an assembly jar. d55bb52 [Michael Armbrust] add local warehouse/metastore to gitignore. 495d9dc [Michael Armbrust] Add an expression for when we decide to support LIKE natively instead of using the HIVE udf. 65f4e69 [Michael Armbrust] remove incorrect comments 0831a3c [Michael Armbrust] support for parsing some operator udfs. 6c27aa7 [Michael Armbrust] more cast parsing. 43db061 [Michael Armbrust] significant generalization of hive udf functionality. 3fe24ec [Michael Armbrust] better implementation of 3vl in Evaluate, fix some > 100 char lines. e5690a6 [Michael Armbrust] add BinaryType adab892 [Michael Armbrust] Clear out functions that are created during tests when reset is called. d408021 [Michael Armbrust] support for printing out arrays in the output in the same form as hive (e.g., [e1, e1]). 8d5f504 [Michael Armbrust] Example of schema RDD using scala's dynamic trait, resulting in a more standard ORM style of usage. 21f0d91 [Michael Armbrust] Simple example of schemaRdd with scala filter function. 0daaa0e [Michael Armbrust] Promote booleans that appear in comparisons. 2b70abf [Michael Armbrust] true and false literals. ef8b0a5 [Michael Armbrust] more tests. 14d070f [Michael Armbrust] add support for correctly extracting partition keys. 0afbe73 [Yin Huai] Merge remote-tracking branch 'upstream/master' into evalauteLiteralsInExpressions 69a0bd4 [Michael Armbrust] promote strings in predicates with number too. 3946e31 [Michael Armbrust] don't build strings unless assertion fails. 90c453d [Michael Armbrust] more tests passing! 6e6417a [Michael Armbrust] correct handling of nulls in boolean logic and sorting. 8000504 [Michael Armbrust] Improve type coercion. 9087152 [Michael Armbrust] fix toString of Not. 58b111c [Michael Armbrust] fix bad scaladoc tag. d5c05c6 [Michael Armbrust] For now, ignore the big data benchmark tests when the data isn't there. ac6376d [Michael Armbrust] Split out general shark query execution driver from test harness. 1d0ae1e [Michael Armbrust] Switch from IndexSeq[Any] to Row interface that will allow us unboxed access to primitive types. d873b2b [Yin Huai] Remove numbers associated with test cases. 8545675 [Yin Huai] Merge remote-tracking branch 'upstream/master' into evalauteLiteralsInExpressions b34a9eb [Michael Armbrust] Merge branch 'master' into filterPushDown d1e7b8e [Michael Armbrust] Update README.md c8b1553 [Michael Armbrust] Update README.md 9307ef9 [Michael Armbrust] update list of passing tests. 934c18c [Michael Armbrust] Filter out non-deterministic lines when comparing test answers. a045c9c [Michael Armbrust] SparkAggregate doesn't actually support sum right now. ae0024a [Yin Huai] update cf80545 [Yin Huai] Merge remote-tracking branch 'origin/evalauteLiteralsInExpressions' into evalauteLiteralsInExpressions 21976ae [Yin Huai] update b4999fe [Yin Huai] Merge remote-tracking branch 'upstream/filterPushDown' into evalauteLiteralsInExpressions dedbf0c [Yin Huai] support Boolean literals eaac9e2 [Yin Huai] explain the limitation of the current EvaluateLiterals 37817b5 [Yin Huai] add a comment to EvaluateLiterals. 468667f [Yin Huai] First draft of literal evaluation in the optimization phase. TreeNode has been extended to support transform in the post order. So, for an expression, we can evaluate literal from the leaf nodes of this expression tree. For an attribute reference in the expression node, we just leave it as is. b1d1843 [Michael Armbrust] more work on big data benchmark tests. cc9a957 [Michael Armbrust] support for creating test tables outside of TestShark 7d7fa9f [Michael Armbrust] support for create table as 5f54f03 [Michael Armbrust] parsing for ASC d42b725 [Michael Armbrust] Sum of strings requires cast 34b30fa [Michael Armbrust] not all attributes need to be bound (e.g. output attributes that are contained in non-leaf operators.) 81659cb [Michael Armbrust] implement transform operator. 5cd76d6 [Michael Armbrust] break up the file based test case code for reuse 1031b65 [Michael Armbrust] support for case insensitive resolution. 320df04 [Michael Armbrust] add snapshot repo for databricks (has shark/spark snapshots) b6f083e [Michael Armbrust] support for publishing scala doc to github from sbt d9d18b4 [Michael Armbrust] debug logging implicit. 669089c [Yin Huai] support Boolean literals ef3321e [Yin Huai] explain the limitation of the current EvaluateLiterals 73a05fd [Yin Huai] add a comment to EvaluateLiterals. 191eb7d [Yin Huai] First draft of literal evaluation in the optimization phase. TreeNode has been extended to support transform in the post order. So, for an expression, we can evaluate literal from the leaf nodes of this expression tree. For an attribute reference in the expression node, we just leave it as is. 80039cc [Yin Huai] Merge pull request #1 from yhuai/master cbe1ca1 [Yin Huai] add explicit result type to the overloaded sideBySide 5c518e4 [Michael Armbrust] fix bug in test. b50dd0e [Michael Armbrust] fix return type of overloaded method 05679b7 [Michael Armbrust] download assembly jar for easy compiling during interview. 8c60cc0 [Michael Armbrust] Update README.md 03b9526 [Michael Armbrust] First draft of optimizer tests. f392755 [Michael Armbrust] Add flatMap to TreeNode 6cbe8d1 [Michael Armbrust] fix bug in side by side, add support for working with unsplit strings 15a53fc [Michael Armbrust] more generic sum calculation and better binding of grouping expressions. 06749d0 [Michael Armbrust] add expression enumerations for query plan operators and recursive version of transform expression. 4b0a888 [Michael Armbrust] implement string comparison and more casts. 356b321 [Michael Armbrust] Update README.md 3776395 [Michael Armbrust] Update README.md 304d17d [Michael Armbrust] Create README.md b7d8be0 [Michael Armbrust] more tests passing. b82481f [Michael Armbrust] add todo comment. 02e6dee [Michael Armbrust] add another test that breaks the harness to the blacklist. cc5efe3 [Michael Armbrust] First draft of broadcast nested loop join with full outer support. c43a259 [Michael Armbrust] comments 15ff448 [Michael Armbrust] better error message when a dsl test throws an exception 76ec650 [Michael Armbrust] fix join conditions e10df99 [Michael Armbrust] Create new expr ids for local relations that exist more than once in a query plan. 91573a4 [Michael Armbrust] initial type promotion e2ef4a5 [Michael Armbrust] logging e43dc1e [Michael Armbrust] add string => int cast evaluation f1f7e96 [Michael Armbrust] fix incorrect generation of join keys 2b27230 [Michael Armbrust] add depth based subtree access 0f6279f [Michael Armbrust] broken tests. 389bc0b [Michael Armbrust] support for partitioned columns in output. 12584f4 [Michael Armbrust] better errors for missing clauses. support for matching multiple clauses with the same name. b67a225 [Michael Armbrust] better errors when types don't match up. 9e74808 [Michael Armbrust] add children resolved. 6d03ce9 [Michael Armbrust] defaults for unresolved relation 2469b00 [Michael Armbrust] skip nodes with unresolved children when doing coersions be5ae2c [Michael Armbrust] better resolution logging cb7b5af [Michael Armbrust] views example 420e05b [Michael Armbrust] more tests passing! 6916c63 [Michael Armbrust] Reading from partitioned hive tables. a1245f9 [Michael Armbrust] more tests passing 956e760 [Michael Armbrust] extended explain 5f14c35 [Michael Armbrust] more test tables supported 175c43e [Michael Armbrust] better errors for parse exceptions 480ade5 [Michael Armbrust] don't use partial cached results. 8a9d21c [Michael Armbrust] fix evaluation 7aee69c [Michael Armbrust] parsing for joins, boolean logic 7fcf480 [Michael Armbrust] test for and logic 3ea9b00 [Michael Armbrust] don't use simpleString if there are no new lines. 6902490 [Michael Armbrust] fix boolean logic evaluation 4d5eba7 [Michael Armbrust] add more dsl for expression arithmetic and boolean logic 8b2a2ee [Michael Armbrust] more tests passing! ad1f3b4 [Michael Armbrust] toString for null literals a5c0a1b [Michael Armbrust] more test harness improvements: * regex whitelist * side by side answer comparison (still needs formatting work) 60ec19d [Michael Armbrust] initial support for udfs c45b440 [Michael Armbrust] support for is (not) null and boolean logic 7f4a1dc [Michael Armbrust] add NoRelation logical operator 72e183b [Michael Armbrust] support for null values in tree node args. ad596d2 [Michael Armbrust] add sc to Union's otherCopyArgs e5c9d1a [Michael Armbrust] use nonEmpty dcc4fe1 [Michael Armbrust] support for src1 test table. c78b587 [Michael Armbrust] casting. 75c3f3f [Michael Armbrust] add support for logging with scalalogging. da2c011 [Michael Armbrust] make it more obvious when results are being truncated. 96b73ba [Michael Armbrust] more docs in TestShark 18524fd [Michael Armbrust] add method to SharkSqlQuery for directly executing the same query on hive. e6d063b [Michael Armbrust] more join tests. 664c1c3 [Michael Armbrust] make parsing of function names case insensitive. 0967d4e [Michael Armbrust] fix hardcoded path to hiveDevHome. 1a6db68 [Michael Armbrust] spelling 7638cb4 [Michael Armbrust] simple join execution with dsl tests. no hive tests yes. 859d4c9 [Michael Armbrust] better argString printing of nested trees. fc53615 [Michael Armbrust] add same instance comparisons for tree nodes. a026e6b [Michael Armbrust] move out hive specific operators fff4d1c [Michael Armbrust] add simple query execution debugging e2120ab [Michael Armbrust] sorting for strings da06eb6 [Michael Armbrust] Parsing for sortby and joins 9eb5c5e [Michael Armbrust] override equality in Attribute references to compare exprId. 8eb2460 [Michael Armbrust] add system property to override whitelist. 88124bb [Michael Armbrust] make strategy evaluation lazy. 74a3a21 [Michael Armbrust] implement outputSet d25b171 [Michael Armbrust] Add AND and OR expressions 67f0a4a [Michael Armbrust] dsl improvements: string to attribute, subquery, unionAll 12acf0a [Michael Armbrust] add .DS_Store for macs f7da6ce [Michael Armbrust] add agg with grouping expr in select test 36805b3 [Michael Armbrust] pull out and improve aggregation 75613e1 [Michael Armbrust] better evaluations failure messages. 4789a35 [Michael Armbrust] weaken type since its hard to create pure references. e89dd36 [Michael Armbrust] no newline for online trees d0590d4 [Michael Armbrust] include stack trace for catalyst failures. 081c0d9 [Michael Armbrust] more generic computation of agg functions. 31af3a0 [Michael Armbrust] fail when clauses are unhandeled in the parser ecd45b2 [Michael Armbrust] Add more passing tests. 97d5419 [Michael Armbrust] fix alignment. 565cc13 [Michael Armbrust] make the canary query optional. a95e65c [Michael Armbrust] support for resolving qualified attribute references. e1dfa0c [Michael Armbrust] better error reporting for comparison tests when hive works but catalyst fails. 4640a0b [Michael Armbrust] handle test tables when database is specified. bef12e3 [Michael Armbrust] Add Subquery node and trivial optimizer to remove it after analysis. fec5158 [Michael Armbrust] add hive / idea files to .gitignore 3f97ffe [Michael Armbrust] Rename Hive => HiveQl 656b836 [Michael Armbrust] Support for parsing select clause aliases. 3ca7414 [Michael Armbrust] StopAfter needs otherCopyArgs. 3ffde66 [Michael Armbrust] When the child of an alias is unresolved it should return an unresolved attribute instead of throwing an exception. 8cbef8a [Michael Armbrust] spelling aa8c37c [Michael Armbrust] Better toString for SortOrder 1bb8b45 [Michael Armbrust] fix error message for UnresolvedExceptions a2e0327 [Michael Armbrust] add a bunch of tests. 4a3e1ea [Michael Armbrust] docs and use shark for data loading. 339bb8f [Michael Armbrust] better docs, Not support 1d7b2d9 [Michael Armbrust] Add NaN conversions. 46a2534 [Michael Armbrust] only run canary query on failure. 8996066 [Michael Armbrust] remove protected from makeCopy 53bcf41 [Michael Armbrust] testing improvements: * reset hive vars * delete indexes and tables * delete database * reset to use default database * record tests that pass 04a372a [Michael Armbrust] add a flag for running all tests. 3b2235b [Michael Armbrust] More general implementation of arithmetic. edd7795 [Michael Armbrust] More testing improvements: * Check that results match for native commands * Ensure explain commands can be planned * Cache hive "golden" results da6c577 [Michael Armbrust] add string <==> file utility functions. 3adf5ca [Michael Armbrust] Initial support for groupBy and count. 7bcd8a4 [Michael Armbrust] Improvements to comparison tests: * Sort answer when query doesn't contain an order by. * Display null values the same as Hive. * Print full query results in easy to read format when they differ. a52e7c9 [Michael Armbrust] Transform children that are present in sequences of the product. d66ba7e [Michael Armbrust] drop printlns. 88f2efd [Michael Armbrust] Add sum / count distinct expressions. 05adedc [Michael Armbrust] rewrite relative paths when loading data in TestShark 07784b3 [Michael Armbrust] add support for rewriting paths and running 'set' commands. b8a9910 [Michael Armbrust] quote tests passing. 8e5e267 [Michael Armbrust] handle aliased select expressions. 4286a96 [Michael Armbrust] drop debugging println ac34aeb [Michael Armbrust] proof of concept for hive ast transformations. 2238b00 [Michael Armbrust] better error when makeCopy functions fails due to incorrect arguments ff1eab8 [Michael Armbrust] start trying to make insert into hive table more general. 74a6337 [Michael Armbrust] use fastEquals when doing transformations. 1184a23 [Michael Armbrust] add native test for escapes. b972b18 [Michael Armbrust] create BaseRelation class fa6bce9 [Michael Armbrust] implement union 6391a87 [Michael Armbrust] count aggregate. d47c317 [Michael Armbrust] add unary minus, more tests passing. c7114e4 [Michael Armbrust] first draft of star expansion. 044c43d [Michael Armbrust] better support for numeric literal parsing. 1d0f072 [Michael Armbrust] use native drop table as it doesn't appear to fail when the "table" is actually a view. 61503c5 [Michael Armbrust] add cached toRdd 2036883 [Michael Armbrust] skip explain queries when testing. ebac4b1 [Michael Armbrust] fix bug in sort reference calculation ca0dee0 [Michael Armbrust] docs. 1ee0471 [Michael Armbrust] string literal parsing. 357278b [Michael Armbrust] add limit support 9b3e479 [Michael Armbrust] creation of string literals. 02efa30 [Michael Armbrust] alias evaluation cb68b33 [Michael Armbrust] parsing for random sample in hive ql. 126dd36 [Michael Armbrust] include query plans in failure output bb59ae9 [Michael Armbrust] doc fixes 7e68286 [Michael Armbrust] fix confusing naming 768bb25 [Michael Armbrust] handle errors in shark query toString 829c3ce [Michael Armbrust] Auto loading of test data on demand. Add reset method to test shark. Make test shark a singleton to avoid weirdness with the hive megastore. ad02e41 [Michael Armbrust] comment jdo dependency 7bc89fe [Michael Armbrust] add collect to TreeNode. 438cf74 [Michael Armbrust] create explicit treeString function in addition to toString override. docs. 09679ee [Michael Armbrust] fix bug in TreeNode foreach 2930b27 [Michael Armbrust] more specific name for del query tests. 8842549 [Michael Armbrust] docs. da81f81 [Michael Armbrust] Implementation and tests for simple AVG query in Hive SQL. a8969b9 [Michael Armbrust] Factor out hive query comparison test framework. 1a7efb0 [Michael Armbrust] specialize spark aggregate for global aggregations. a36dd9a [Michael Armbrust] evaluation for other > data types. cae729b [Michael Armbrust] remove unnecessary lazy vals. d8e12af [Michael Armbrust] docs 3a60d67 [Michael Armbrust] implement average, placeholder for count f05c106 [Michael Armbrust] checkAnswer handles single row results. 2730534 [Michael Armbrust] implement inputSet a9aa79d [Michael Armbrust] debugging for sort exec 8bec3c9 [Michael Armbrust] better tree makeCopy when there are two constructors. 554b4b2 [Michael Armbrust] BoundAttribute pretty printing. 754f5fa [Michael Armbrust] dsl for setting nullability a206d7a [Michael Armbrust] clean up query tests. 84ad6ef [Michael Armbrust] better sort implementation and tests. de24923 [Michael Armbrust] add double type. 9611a2c [Michael Armbrust] literal creation for doubles. 7358313 [Michael Armbrust] sort order returns child type. b544715 [Michael Armbrust] implement eval for rand, and > for doubles 7013bad [Michael Armbrust] asc, desc should work for expressions and unresolved attributes (symbols) 1c1a35e [Michael Armbrust] add simple Rand expression. 3ca51de [Michael Armbrust] add orderBy to dsl 7ae41ab [Michael Armbrust] more literal implicit conversions b18b675 [Michael Armbrust] First cut at native query tests for shark. d392e29 [Michael Armbrust] add toRdd implicit conversion for logical plans in TestShark. 5eac895 [Michael Armbrust] better error when descending is specified. 2b16f86 [Michael Armbrust] add todo e527bb8 [Michael Armbrust] remove arguments to binary predicate constructor as they seem to break serialization 9dde3c8 [Michael Armbrust] add project and filter operations. ad9037b [Michael Armbrust] Add support for local relations. 6227143 [Michael Armbrust] evaluation of Equals. 7526290 [Michael Armbrust] BoundReference should also be an Attribute. bd33e26 [Michael Armbrust] more documentation 5de0ea3 [Michael Armbrust] Move all shark specific into a separate package. Lots of documentation improvements. 0ae292b [Michael Armbrust] implement calculation of sort expressions. 9fd5011 [Michael Armbrust] First cut at expression evaluation. 6259e3a [Michael Armbrust] cleanup 787e5a2 [Michael Armbrust] use fastEquals f90da36 [Michael Armbrust] better printing of optimization exceptions b05dd67 [Michael Armbrust] Application of rules to fixed point. bb2e0db [Michael Armbrust] pretty print for literals. 1ec3287 [Michael Armbrust] Add extractor for IntegerLiterals. d3a3687 [Michael Armbrust] add fastEquals 2b4935b [Michael Armbrust] set sbt.version explicitly 46dfd7f [Michael Armbrust] first cut at checking answer for HiveCompatability tests. c79f2fd [Michael Armbrust] insert operator should return an empty rdd. 14c22ec [Michael Armbrust] implement sorting when the sort expression is the first attribute of the input. ae7b4c3 [Michael Armbrust] remove implicit dependencies. now compiles without copying things into lib/ manually. 84082f9 [Michael Armbrust] add sbt binaries and scripts 15371a8 [Michael Armbrust] First draft of simple Hive DDL parser. 063bf44 [Michael Armbrust] Periods should end all comments. e1f7f4c [Michael Armbrust] Remove "NativePlaceholder" hack. ed3633e [Michael Armbrust] start consolidating Hive/Shark specific code. first hive compatibility test case passing! b34a770 [Michael Armbrust] Add data sink strategy, make strategy application a little more robust. e7174ec [Michael Armbrust] fix schema, add docs, make helper method protected. 26f410a [Michael Armbrust] physical traits should extend PhysicalPlan. dc72469 [Michael Armbrust] beginning of hive compatibility testing framework. 0763490 [Michael Armbrust] support for hive native command pass-through. d8a924f [Michael Armbrust] scaladoc 29a7163 [Michael Armbrust] Insert into hive table physical operator. 633cebc [Michael Armbrust] better error message when there is no appropriate planning strategy. 59ac444 [Michael Armbrust] add unary expression 3aa1b28 [Michael Armbrust] support for table names in the form 'database.tableName' 665f7d0 [Michael Armbrust] add logical nodes for hive data sinks. 64d2923 [Michael Armbrust] Add classes for representing sorts. f72b7ce [Michael Armbrust] first trivial end to end query execution. 5c7d244 [Michael Armbrust] first draft of references implementation. 7bff274 [Michael Armbrust] point at new shark. c7cd57f [Michael Armbrust] docs for util function. 910811c [Michael Armbrust] check each item of the sequence ef21a0b [Michael Armbrust] line up comments. 4b765d5 [Michael Armbrust] docs, drop println 6f9bafd [Michael Armbrust] empty output for unresolved relation to avoid exception in resolution. a703c49 [Michael Armbrust] this order works better until fixed point is implemented. ec1d7c0 [Michael Armbrust] Simple attribute resolution. 069df02 [Michael Armbrust] parsing binary predicates a1cf754 [Michael Armbrust] add joins and equality. 3f5bc98 [Michael Armbrust] add optiq to sbt. 54f3460 [Michael Armbrust] initial optiq parsing. d9161ce [Michael Armbrust] add join operator 1e423eb [Michael Armbrust] placeholders in LogicalPlan, docs 24ef6fb [Michael Armbrust] toString for alias. ae7d776 [Michael Armbrust] add nullability changing function d49dc02 [Michael Armbrust] scaladoc for named exprs 7c45dd7 [Michael Armbrust] pretty printing of trees. 78e34bf [Michael Armbrust] simple git ignore. 7ba19be [Michael Armbrust] First draft of interface to hive metastore. 7e7acf0 [Michael Armbrust] physical placeholder. 1c11136 [Michael Armbrust] first draft of error handling / plans for debugging. 3766a41 [Michael Armbrust] rearrange utility functions. 7fb3d5e [Michael Armbrust] docs and equality improvements. 45da47b [Michael Armbrust] flesh out plans and expressions a little. first cut at named expressions. 002d4d4 [Michael Armbrust] default to no alias. be25003 [Michael Armbrust] add repl initialization to sbt. 0608a00 [Michael Armbrust] tighten public interface a1a8b38 [Michael Armbrust] test that ids don't change for no-op transforms. daa71ca [Michael Armbrust] foreach, maps, and scaladoc 6a158cb [Michael Armbrust] simple transform working. db0299f [Michael Armbrust] basic analysis of relations minus transform function. f74c4ee [Michael Armbrust] parsing a simple query. 08e4f57 [Michael Armbrust] upgrade scala include shark. d3c6404 [Michael Armbrust] initial commit
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Joint work with @hirakendu, @etrain, @atalwalkar and @harsha2010. Key features: + Supports binary classification and regression + Supports gini, entropy and variance for information gain calculation + Supports both continuous and categorical features The algorithm has gone through several development iterations over the last few months leading to a highly optimized implementation. Optimizations include: 1. Level-wise training to reduce passes over the entire dataset. 2. Bin-wise split calculation to reduce computation overhead. 3. Aggregation over partitions before combining to reduce communication overhead. Author: Manish Amde <[email protected]> Author: manishamde <[email protected]> Author: Xiangrui Meng <[email protected]> Closes apache#79 from manishamde/tree and squashes the following commits: 1e8c704 [Manish Amde] remove numBins field in the Strategy class 7d54b4f [manishamde] Merge pull request #4 from mengxr/dtree f536ae9 [Xiangrui Meng] another pass on code style e1dd86f [Manish Amde] implementing code style suggestions 62dc723 [Manish Amde] updating javadoc and converting helper methods to package private to allow unit testing 201702f [Manish Amde] making some more methods private f963ef5 [Manish Amde] making methods private c487e6a [manishamde] Merge pull request #1 from mengxr/dtree 24500c5 [Xiangrui Meng] minor style updates 4576b64 [Manish Amde] documentation and for to while loop conversion ff363a7 [Manish Amde] binary search for bins and while loop for categorical feature bins 632818f [Manish Amde] removing threshold for classification predict method 2116360 [Manish Amde] removing dummy bin calculation for categorical variables 6068356 [Manish Amde] ensuring num bins is always greater than max number of categories 62c2562 [Manish Amde] fixing comment indentation ad1fc21 [Manish Amde] incorporated mengxr's code style suggestions d1ef4f6 [Manish Amde] more documentation 794ff4d [Manish Amde] minor improvements to docs and style eb8fcbe [Manish Amde] minor code style updates cd2c2b4 [Manish Amde] fixing code style based on feedback 63e786b [Manish Amde] added multiple train methods for java compatability d3023b3 [Manish Amde] adding more docs for nested methods 84f85d6 [Manish Amde] code documentation 9372779 [Manish Amde] code style: max line lenght <= 100 dd0c0d7 [Manish Amde] minor: some docs 0dd7659 [manishamde] basic doc 5841c28 [Manish Amde] unit tests for categorical features f067d68 [Manish Amde] minor cleanup c0e522b [Manish Amde] updated predict and split threshold logic b09dc98 [Manish Amde] minor refactoring 6b7de78 [Manish Amde] minor refactoring and tests d504eb1 [Manish Amde] more tests for categorical features dbb7ac1 [Manish Amde] categorical feature support 6df35b9 [Manish Amde] regression predict logic 53108ed [Manish Amde] fixing index for highest bin e23c2e5 [Manish Amde] added regression support c8f6d60 [Manish Amde] adding enum for feature type b0e3e76 [Manish Amde] adding enum for feature type 154aa77 [Manish Amde] enums for configurations 733d6dd [Manish Amde] fixed tests 02c595c [Manish Amde] added command line parsing 98ec8d5 [Manish Amde] tree building and prediction logic b0eb866 [Manish Amde] added logic to handle leaf nodes 80e8c66 [Manish Amde] working version of multi-level split calculation 4798aae [Manish Amde] added gain stats class dad0afc [Manish Amde] decison stump functionality working 03f534c [Manish Amde] some more tests 0012a77 [Manish Amde] basic stump working 8bca1e2 [Manish Amde] additional code for creating intermediate RDD 92cedce [Manish Amde] basic building blocks for intermediate RDD calculation. untested. cd53eae [Manish Amde] skeletal framework
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1. Renamed StopAfter to Limit to be more consistent with naming in other relational databases. 2. Renamed TopK to TakeOrdered to be more consistent with Spark RDD API. 3. Avoid breaking lineage in Limit. 4. Added a bunch of override's to execution/basicOperators.scala. @marmbrus @liancheng Author: Reynold Xin <[email protected]> Author: Michael Armbrust <[email protected]> Closes apache#233 from rxin/limit and squashes the following commits: 13eb12a [Reynold Xin] Merge pull request #1 from marmbrus/limit 92b9727 [Michael Armbrust] More hacks to make Maps serialize with Kryo. 4fc8b4e [Reynold Xin] Merge branch 'master' of github.com:apache/spark into limit 87b7d37 [Reynold Xin] Use the proper serializer in limit. 9b79246 [Reynold Xin] Updated doc for Limit. 47d3327 [Reynold Xin] Copy tuples in Limit before shuffle. 231af3a [Reynold Xin] Limit/TakeOrdered: 1. Renamed StopAfter to Limit to be more consistent with naming in other relational databases. 2. Renamed TopK to TakeOrdered to be more consistent with Spark RDD API. 3. Avoid breaking lineage in Limit. 4. Added a bunch of override's to execution/basicOperators.scala.
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…st data This PR allows Spark to automatically cleanup metadata and data related to persisted RDDs, shuffles and broadcast variables when the corresponding RDDs, shuffles and broadcast variables fall out of scope from the driver program. This is still a work in progress as broadcast cleanup has not been implemented. **Implementation Details** A new class `ContextCleaner` is responsible cleaning all the state. It is instantiated as part of a `SparkContext`. RDD and ShuffleDependency classes have overridden `finalize()` function that gets called whenever their instances go out of scope. The `finalize()` function enqueues the object’s identifier (i.e. RDD ID, shuffle ID, etc.) with the `ContextCleaner`, which is a very short and cheap operation and should not significantly affect the garbage collection mechanism. The `ContextCleaner`, on a different thread, performs the cleanup, whose details are given below. *RDD cleanup:* `ContextCleaner` calls `RDD.unpersist()` is used to cleanup persisted RDDs. Regarding metadata, the DAGScheduler automatically cleans up all metadata related to a RDD after all jobs have completed. Only the `SparkContext.persistentRDDs` keeps strong references to persisted RDDs. The `TimeStampedHashMap` used for that has been replaced by `TimeStampedWeakValueHashMap` that keeps only weak references to the RDDs, allowing them to be garbage collected. *Shuffle cleanup:* New BlockManager message `RemoveShuffle(<shuffle ID>)` asks the `BlockManagerMaster` and currently active `BlockManager`s to delete all the disk blocks related to the shuffle ID. `ContextCleaner` cleans up shuffle data using this message and also cleans up the metadata in the `MapOutputTracker` of the driver. The `MapOutputTracker` at the workers, that caches the shuffle metadata, maintains a `BoundedHashMap` to limit the shuffle information it caches. Refetching the shuffle information from the driver is not too costly. *Broadcast cleanup:* To be done. [This PR](https://github.com/apache/incubator-spark/pull/543/) adds mechanism for explicit cleanup of broadcast variables. `Broadcast.finalize()` will enqueue its own ID with ContextCleaner and the PRs mechanism will be used to unpersist the Broadcast data. *Other cleanup:* `ShuffleMapTask` and `ResultTask` caches tasks and used TTL based cleanup (using `TimeStampedHashMap`), so nothing got cleaned up if TTL was not set. Instead, they now use `BoundedHashMap` to keep a limited number of map output information. Cost of repopulating the cache if necessary is very small. **Current state of implementation** Implemented RDD and shuffle cleanup. Things left to be done are. - Cleaning up for broadcast variable still to be done. - Automatic cleaning up keys with empty weak refs as values in `TimeStampedWeakValueHashMap` Author: Tathagata Das <[email protected]> Author: Andrew Or <[email protected]> Author: Roman Pastukhov <[email protected]> Closes apache#126 from tdas/state-cleanup and squashes the following commits: 61b8d6e [Tathagata Das] Fixed issue with Tachyon + new BlockManager methods. f489fdc [Tathagata Das] Merge remote-tracking branch 'apache/master' into state-cleanup d25a86e [Tathagata Das] Fixed stupid typo. cff023c [Tathagata Das] Fixed issues based on Andrew's comments. 4d05314 [Tathagata Das] Scala style fix. 2b95b5e [Tathagata Das] Added more documentation on Broadcast implementations, specially which blocks are told about to the driver. Also, fixed Broadcast API to hide destroy functionality. 41c9ece [Tathagata Das] Added more unit tests for BlockManager, DiskBlockManager, and ContextCleaner. 6222697 [Tathagata Das] Fixed bug and adding unit test for removeBroadcast in BlockManagerSuite. 104a89a [Tathagata Das] Fixed failing BroadcastSuite unit tests by introducing blocking for removeShuffle and removeBroadcast in BlockManager* a430f06 [Tathagata Das] Fixed compilation errors. b27f8e8 [Tathagata Das] Merge pull request #3 from andrewor14/cleanup cd72d19 [Andrew Or] Make automatic cleanup configurable (not documented) ada45f0 [Andrew Or] Merge branch 'state-cleanup' of github.com:tdas/spark into cleanup a2cc8bc [Tathagata Das] Merge remote-tracking branch 'apache/master' into state-cleanup c5b1d98 [Andrew Or] Address Patrick's comments a6460d4 [Andrew Or] Merge github.com:apache/spark into cleanup 762a4d8 [Tathagata Das] Merge pull request #1 from andrewor14/cleanup f0aabb1 [Andrew Or] Correct semantics for TimeStampedWeakValueHashMap + add tests 5016375 [Andrew Or] Address TD's comments 7ed72fb [Andrew Or] Fix style test fail + remove verbose test message regarding broadcast 634a097 [Andrew Or] Merge branch 'state-cleanup' of github.com:tdas/spark into cleanup 7edbc98 [Tathagata Das] Merge remote-tracking branch 'apache-github/master' into state-cleanup 8557c12 [Andrew Or] Merge github.com:apache/spark into cleanup e442246 [Andrew Or] Merge github.com:apache/spark into cleanup 88904a3 [Andrew Or] Make TimeStampedWeakValueHashMap a wrapper of TimeStampedHashMap fbfeec8 [Andrew Or] Add functionality to query executors for their local BlockStatuses 34f436f [Andrew Or] Generalize BroadcastBlockId to remove BroadcastHelperBlockId 0d17060 [Andrew Or] Import, comments, and style fixes (minor) c92e4d9 [Andrew Or] Merge github.com:apache/spark into cleanup f201a8d [Andrew Or] Test broadcast cleanup in ContextCleanerSuite + remove BoundedHashMap e95479c [Andrew Or] Add tests for unpersisting broadcast 544ac86 [Andrew Or] Clean up broadcast blocks through BlockManager* d0edef3 [Andrew Or] Add framework for broadcast cleanup ba52e00 [Andrew Or] Refactor broadcast classes c7ccef1 [Andrew Or] Merge branch 'bc-unpersist-merge' of github.com:ignatich/incubator-spark into cleanup 6c9dcf6 [Tathagata Das] Added missing Apache license d2f8b97 [Tathagata Das] Removed duplicate unpersistRDD. a007307 [Tathagata Das] Merge remote-tracking branch 'apache/master' into state-cleanup 620eca3 [Tathagata Das] Changes based on PR comments. f2881fd [Tathagata Das] Changed ContextCleaner to use ReferenceQueue instead of finalizer e1fba5f [Tathagata Das] Style fix 892b952 [Tathagata Das] Removed use of BoundedHashMap, and made BlockManagerSlaveActor cleanup shuffle metadata in MapOutputTrackerWorker. a7260d3 [Tathagata Das] Added try-catch in context cleaner and null value cleaning in TimeStampedWeakValueHashMap. e61daa0 [Tathagata Das] Modifications based on the comments on PR 126. ae9da88 [Tathagata Das] Removed unncessary TimeStampedHashMap from DAGScheduler, added try-catches in finalize() methods, and replaced ArrayBlockingQueue to LinkedBlockingQueue to avoid blocking in Java's finalizing thread. cb0a5a6 [Tathagata Das] Fixed docs and styles. a24fefc [Tathagata Das] Merge remote-tracking branch 'apache/master' into state-cleanup 8512612 [Tathagata Das] Changed TimeStampedHashMap to use WrappedJavaHashMap. e427a9e [Tathagata Das] Added ContextCleaner to automatically clean RDDs and shuffles when they fall out of scope. Also replaced TimeStampedHashMap to BoundedHashMaps and TimeStampedWeakValueHashMap for the necessary hashmap behavior. 80dd977 [Roman Pastukhov] Fix for Broadcast unpersist patch. 1e752f1 [Roman Pastukhov] Added unpersist method to Broadcast.
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Currently, expression does not support the "constant null" well in constant folding. e.g. Sum(a, 0) actually always produces Literal(0, NumericType) in runtime. For example: ``` explain select isnull(key+null) from src; == Logical Plan == Project [HiveGenericUdf#isnull((key#30 + CAST(null, IntegerType))) AS c_0#28] MetastoreRelation default, src, None == Optimized Logical Plan == Project [true AS c_0#28] MetastoreRelation default, src, None == Physical Plan == Project [true AS c_0#28] HiveTableScan [], (MetastoreRelation default, src, None), None ``` I've create a new Optimization rule called NullPropagation for such kind of constant folding. Author: Cheng Hao <[email protected]> Author: Michael Armbrust <[email protected]> Closes apache#482 from chenghao-intel/optimize_constant_folding and squashes the following commits: 2f14b50 [Cheng Hao] Fix code style issues 68b9fad [Cheng Hao] Remove the Literal pattern matching for NullPropagation 29c8166 [Cheng Hao] Update the code for feedback of code review 50444cc [Cheng Hao] Remove the unnecessary null checking 80f9f18 [Cheng Hao] Update the UnitTest for aggregation constant folding 27ea3d7 [Cheng Hao] Fix Constant Folding Bugs & Add More Unittests b28e03a [Cheng Hao] Merge pull request #1 from marmbrus/pr/482 9ccefdb [Michael Armbrust] Add tests for optimized expression evaluation. 543ef9d [Cheng Hao] fix code style issues 9cf0396 [Cheng Hao] update code according to the code review comment 536c005 [Cheng Hao] Add Exceptional case for constant folding 3c045c7 [Cheng Hao] Optimize the Constant Folding by adding more rules 2645d4f [Cheng Hao] Constant Folding(null propagation)
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May 19, 2014
…tFile() https://issues.apache.org/jira/browse/SPARK-1757 The first test succeeds, but the second test fails with exception: ``` [info] - save and load case class RDD with Nones as parquet *** FAILED *** (14 milliseconds) [info] java.lang.RuntimeException: Unsupported datatype StructType(List()) [info] at scala.sys.package$.error(package.scala:27) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$.fromDataType(ParquetRelation.scala:201) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$$anonfun$1.apply(ParquetRelation.scala:235) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$$anonfun$1.apply(ParquetRelation.scala:235) [info] at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244) [info] at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244) [info] at scala.collection.immutable.List.foreach(List.scala:318) [info] at scala.collection.TraversableLike$class.map(TraversableLike.scala:244) [info] at scala.collection.AbstractTraversable.map(Traversable.scala:105) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$.convertFromAttributes(ParquetRelation.scala:234) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$.writeMetaData(ParquetRelation.scala:267) [info] at org.apache.spark.sql.parquet.ParquetRelation$.createEmpty(ParquetRelation.scala:143) [info] at org.apache.spark.sql.parquet.ParquetRelation$.create(ParquetRelation.scala:122) [info] at org.apache.spark.sql.execution.SparkStrategies$ParquetOperations$.apply(SparkStrategies.scala:139) [info] at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$1.apply(QueryPlanner.scala:58) [info] at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$1.apply(QueryPlanner.scala:58) [info] at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371) [info] at org.apache.spark.sql.catalyst.planning.QueryPlanner.apply(QueryPlanner.scala:59) [info] at org.apache.spark.sql.SQLContext$QueryExecution.sparkPlan$lzycompute(SQLContext.scala:264) [info] at org.apache.spark.sql.SQLContext$QueryExecution.sparkPlan(SQLContext.scala:264) [info] at org.apache.spark.sql.SQLContext$QueryExecution.executedPlan$lzycompute(SQLContext.scala:265) [info] at org.apache.spark.sql.SQLContext$QueryExecution.executedPlan(SQLContext.scala:265) [info] at org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:268) [info] at org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:268) [info] at org.apache.spark.sql.SchemaRDDLike$class.saveAsParquetFile(SchemaRDDLike.scala:66) [info] at org.apache.spark.sql.SchemaRDD.saveAsParquetFile(SchemaRDD.scala:98) ``` Author: Andrew Ash <[email protected]> Author: Michael Armbrust <[email protected]> Closes apache#690 from ash211/rdd-parquet-save and squashes the following commits: 747a0b9 [Andrew Ash] Merge pull request #1 from marmbrus/pr/690 54bd00e [Michael Armbrust] Need to put Option first since Option <: Seq. 8f3f281 [Andrew Ash] SPARK-1757 Add failing test for saving SparkSQL Schemas with Option[?] fields as parquet
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May 30, 2014
A straightforward implementation of LPA algorithm for detecting graph communities using the Pregel framework. Amongst the growing literature on community detection algorithms in networks, LPA is perhaps the most elementary, and despite its flaws it remains a nice and simple approach. Author: Ankur Dave <[email protected]> Author: haroldsultan <[email protected]> Author: Harold Sultan <[email protected]> Closes apache#905 from haroldsultan/master and squashes the following commits: 327aee0 [haroldsultan] Merge pull request #2 from ankurdave/label-propagation 227a4d0 [Ankur Dave] Untabify 0ac574c [haroldsultan] Merge pull request #1 from ankurdave/label-propagation 0e24303 [Ankur Dave] Add LabelPropagationSuite 84aa061 [Ankur Dave] LabelPropagation: Fix compile errors and style; rename from LPA 9830342 [Harold Sultan] initial version of LPA
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Jun 10, 2014
Just submit another solution for apache#395 Author: Daoyuan <[email protected]> Author: Michael Armbrust <[email protected]> Author: Daoyuan Wang <[email protected]> Closes apache#837 from adrian-wang/left-semi-join-support and squashes the following commits: d39cd12 [Daoyuan Wang] Merge pull request #1 from marmbrus/pr/837 6713c09 [Michael Armbrust] Better debugging for failed query tests. 035b73e [Michael Armbrust] Add test for left semi that can't be done with a hash join. 5ec6fa4 [Michael Armbrust] Add left semi to SQL Parser. 4c726e5 [Daoyuan] improvement according to Michael 8d4a121 [Daoyuan] add golden files for leftsemijoin 83a3c8a [Daoyuan] scala style fix 14cff80 [Daoyuan] add support for left semi join
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Jun 12, 2014
This update resolves [SPARK-2065](https://issues.apache.org/jira/browse/SPARK-2065). It gives launched EC2 instances descriptive names by using instance tags. Launched instances now show up in the EC2 console with these names. I used `format()` with named parameters, which I believe is the recommended practice for string formatting in Python, but which doesn’t seem to be used elsewhere in the script. Author: Nicholas Chammas <[email protected]> Author: nchammas <[email protected]> Closes apache#1043 from nchammas/master and squashes the following commits: 69f6e22 [Nicholas Chammas] PEP8 fixes 2627247 [Nicholas Chammas] broke up lines before they hit 100 chars 6544b7e [Nicholas Chammas] [SPARK-2065] give launched instances names 69da6cf [nchammas] Merge pull request #1 from apache/master
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Jun 16, 2014
Thanks goes to @marmbrus for his implementation. Author: Michael Armbrust <[email protected]> Author: Zongheng Yang <[email protected]> Closes apache#1074 from concretevitamin/option-treenode and squashes the following commits: ef27b85 [Zongheng Yang] Merge pull request #1 from marmbrus/pr/1074 73133c2 [Michael Armbrust] TreeNodes can't be inner classes. ab78420 [Zongheng Yang] Add a test. 2ccb721 [Michael Armbrust] Add support for transformation of optional children.
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Jun 27, 2014
Currently, expression does not support the "constant null" well in constant folding. e.g. Sum(a, 0) actually always produces Literal(0, NumericType) in runtime. For example: ``` explain select isnull(key+null) from src; == Logical Plan == Project [HiveGenericUdf#isnull((key#30 + CAST(null, IntegerType))) AS c_0#28] MetastoreRelation default, src, None == Optimized Logical Plan == Project [true AS c_0#28] MetastoreRelation default, src, None == Physical Plan == Project [true AS c_0#28] HiveTableScan [], (MetastoreRelation default, src, None), None ``` I've create a new Optimization rule called NullPropagation for such kind of constant folding. Author: Cheng Hao <[email protected]> Author: Michael Armbrust <[email protected]> Closes apache#482 from chenghao-intel/optimize_constant_folding and squashes the following commits: 2f14b50 [Cheng Hao] Fix code style issues 68b9fad [Cheng Hao] Remove the Literal pattern matching for NullPropagation 29c8166 [Cheng Hao] Update the code for feedback of code review 50444cc [Cheng Hao] Remove the unnecessary null checking 80f9f18 [Cheng Hao] Update the UnitTest for aggregation constant folding 27ea3d7 [Cheng Hao] Fix Constant Folding Bugs & Add More Unittests b28e03a [Cheng Hao] Merge pull request #1 from marmbrus/pr/482 9ccefdb [Michael Armbrust] Add tests for optimized expression evaluation. 543ef9d [Cheng Hao] fix code style issues 9cf0396 [Cheng Hao] update code according to the code review comment 536c005 [Cheng Hao] Add Exceptional case for constant folding 3c045c7 [Cheng Hao] Optimize the Constant Folding by adding more rules 2645d4f [Cheng Hao] Constant Folding(null propagation) (cherry picked from commit 3eb53bd) Signed-off-by: Reynold Xin <[email protected]>
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Jun 27, 2014
…tFile() https://issues.apache.org/jira/browse/SPARK-1757 The first test succeeds, but the second test fails with exception: ``` [info] - save and load case class RDD with Nones as parquet *** FAILED *** (14 milliseconds) [info] java.lang.RuntimeException: Unsupported datatype StructType(List()) [info] at scala.sys.package$.error(package.scala:27) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$.fromDataType(ParquetRelation.scala:201) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$$anonfun$1.apply(ParquetRelation.scala:235) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$$anonfun$1.apply(ParquetRelation.scala:235) [info] at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244) [info] at scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:244) [info] at scala.collection.immutable.List.foreach(List.scala:318) [info] at scala.collection.TraversableLike$class.map(TraversableLike.scala:244) [info] at scala.collection.AbstractTraversable.map(Traversable.scala:105) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$.convertFromAttributes(ParquetRelation.scala:234) [info] at org.apache.spark.sql.parquet.ParquetTypesConverter$.writeMetaData(ParquetRelation.scala:267) [info] at org.apache.spark.sql.parquet.ParquetRelation$.createEmpty(ParquetRelation.scala:143) [info] at org.apache.spark.sql.parquet.ParquetRelation$.create(ParquetRelation.scala:122) [info] at org.apache.spark.sql.execution.SparkStrategies$ParquetOperations$.apply(SparkStrategies.scala:139) [info] at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$1.apply(QueryPlanner.scala:58) [info] at org.apache.spark.sql.catalyst.planning.QueryPlanner$$anonfun$1.apply(QueryPlanner.scala:58) [info] at scala.collection.Iterator$$anon$13.hasNext(Iterator.scala:371) [info] at org.apache.spark.sql.catalyst.planning.QueryPlanner.apply(QueryPlanner.scala:59) [info] at org.apache.spark.sql.SQLContext$QueryExecution.sparkPlan$lzycompute(SQLContext.scala:264) [info] at org.apache.spark.sql.SQLContext$QueryExecution.sparkPlan(SQLContext.scala:264) [info] at org.apache.spark.sql.SQLContext$QueryExecution.executedPlan$lzycompute(SQLContext.scala:265) [info] at org.apache.spark.sql.SQLContext$QueryExecution.executedPlan(SQLContext.scala:265) [info] at org.apache.spark.sql.SQLContext$QueryExecution.toRdd$lzycompute(SQLContext.scala:268) [info] at org.apache.spark.sql.SQLContext$QueryExecution.toRdd(SQLContext.scala:268) [info] at org.apache.spark.sql.SchemaRDDLike$class.saveAsParquetFile(SchemaRDDLike.scala:66) [info] at org.apache.spark.sql.SchemaRDD.saveAsParquetFile(SchemaRDD.scala:98) ``` Author: Andrew Ash <[email protected]> Author: Michael Armbrust <[email protected]> Closes apache#690 from ash211/rdd-parquet-save and squashes the following commits: 747a0b9 [Andrew Ash] Merge pull request #1 from marmbrus/pr/690 54bd00e [Michael Armbrust] Need to put Option first since Option <: Seq. 8f3f281 [Andrew Ash] SPARK-1757 Add failing test for saving SparkSQL Schemas with Option[?] fields as parquet (cherry picked from commit 156df87) Signed-off-by: Reynold Xin <[email protected]>
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Jun 27, 2014
Just submit another solution for apache#395 Author: Daoyuan <[email protected]> Author: Michael Armbrust <[email protected]> Author: Daoyuan Wang <[email protected]> Closes apache#837 from adrian-wang/left-semi-join-support and squashes the following commits: d39cd12 [Daoyuan Wang] Merge pull request #1 from marmbrus/pr/837 6713c09 [Michael Armbrust] Better debugging for failed query tests. 035b73e [Michael Armbrust] Add test for left semi that can't be done with a hash join. 5ec6fa4 [Michael Armbrust] Add left semi to SQL Parser. 4c726e5 [Daoyuan] improvement according to Michael 8d4a121 [Daoyuan] add golden files for leftsemijoin 83a3c8a [Daoyuan] scala style fix 14cff80 [Daoyuan] add support for left semi join (cherry picked from commit 0cf6002) Signed-off-by: Michael Armbrust <[email protected]>
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Jun 27, 2014
Thanks goes to @marmbrus for his implementation. Author: Michael Armbrust <[email protected]> Author: Zongheng Yang <[email protected]> Closes apache#1074 from concretevitamin/option-treenode and squashes the following commits: ef27b85 [Zongheng Yang] Merge pull request #1 from marmbrus/pr/1074 73133c2 [Michael Armbrust] TreeNodes can't be inner classes. ab78420 [Zongheng Yang] Add a test. 2ccb721 [Michael Armbrust] Add support for transformation of optional children. (cherry picked from commit 269fc62) Signed-off-by: Michael Armbrust <[email protected]>
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Jul 14, 2014
copy ARPACK dsaupd/dseupd code from latest breeze change RowMatrix to use sparse SVD change tests for sparse SVD All tests passed. I will run it against some large matrices. Author: Li Pu <[email protected]> Author: Xiangrui Meng <[email protected]> Author: Li Pu <[email protected]> Closes apache#964 from vrilleup/master and squashes the following commits: 7312ec1 [Li Pu] very minor comment fix 4c618e9 [Li Pu] Merge pull request #1 from mengxr/vrilleup-master a461082 [Xiangrui Meng] make superscript show up correctly in doc 861ec48 [Xiangrui Meng] simplify axpy 62969fa [Xiangrui Meng] use BDV directly in symmetricEigs change the computation mode to local-svd, local-eigs, and dist-eigs update tests and docs c273771 [Li Pu] automatically determine SVD compute mode and parameters 7148426 [Li Pu] improve RowMatrix multiply 5543cce [Li Pu] improve svd api 819824b [Li Pu] add flag for dense svd or sparse svd eb15100 [Li Pu] fix binary compatibility 4c7aec3 [Li Pu] improve comments e7850ed [Li Pu] use aggregate and axpy 827411b [Li Pu] fix EOF new line 9c80515 [Li Pu] use non-sparse implementation when k = n fe983b0 [Li Pu] improve scala style 96d2ecb [Li Pu] improve eigenvalue sorting e1db950 [Li Pu] SPARK-1782: svd for sparse matrix using ARPACK
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Jul 14, 2014
Security groups created by `spark-ec2` do not prepend “spark-“ to the name. Since naming the instances themselves is new to `spark-ec2`, it’s better to change that pattern to match the existing naming pattern for the security groups, rather than the other way around. Author: Nicholas Chammas <[email protected]> Author: nchammas <[email protected]> Closes apache#1344 from nchammas/master and squashes the following commits: f7e4581 [Nicholas Chammas] unrelated pep8 fix a36eed0 [Nicholas Chammas] name ec2 instances and security groups consistently de7292a [nchammas] Merge pull request #4 from apache/master 2e4fe00 [nchammas] Merge pull request #3 from apache/master 89fde08 [nchammas] Merge pull request #2 from apache/master 69f6e22 [Nicholas Chammas] PEP8 fixes 2627247 [Nicholas Chammas] broke up lines before they hit 100 chars 6544b7e [Nicholas Chammas] [SPARK-2065] give launched instances names 69da6cf [nchammas] Merge pull request #1 from apache/master
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Jul 16, 2014
After running some more tests on large matrix, found that the BV axpy (breeze/linalg/Vector.scala, axpy) is slower than the BSV axpy (breeze/linalg/operators/SparseVectorOps.scala, sv_dv_axpy), 8s v.s. 2s for each multiplication. The BV axpy operates on an iterator while BSV axpy directly operates on the underlying array. I think the overhead comes from creating the iterator (with a zip) and advancing the pointers. Author: Li Pu <[email protected]> Author: Xiangrui Meng <[email protected]> Author: Li Pu <[email protected]> Closes apache#1378 from vrilleup/master and squashes the following commits: 6fb01a3 [Li Pu] use specialized axpy in RowMatrix 5255f2a [Li Pu] Merge remote-tracking branch 'upstream/master' 7312ec1 [Li Pu] very minor comment fix 4c618e9 [Li Pu] Merge pull request #1 from mengxr/vrilleup-master a461082 [Xiangrui Meng] make superscript show up correctly in doc 861ec48 [Xiangrui Meng] simplify axpy 62969fa [Xiangrui Meng] use BDV directly in symmetricEigs change the computation mode to local-svd, local-eigs, and dist-eigs update tests and docs c273771 [Li Pu] automatically determine SVD compute mode and parameters 7148426 [Li Pu] improve RowMatrix multiply 5543cce [Li Pu] improve svd api 819824b [Li Pu] add flag for dense svd or sparse svd eb15100 [Li Pu] fix binary compatibility 4c7aec3 [Li Pu] improve comments e7850ed [Li Pu] use aggregate and axpy 827411b [Li Pu] fix EOF new line 9c80515 [Li Pu] use non-sparse implementation when k = n fe983b0 [Li Pu] improve scala style 96d2ecb [Li Pu] improve eigenvalue sorting e1db950 [Li Pu] SPARK-1782: svd for sparse matrix using ARPACK
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Jul 16, 2014
Adding two classes: 1) MulticlassMetrics implements various multiclass evaluation metrics 2) MulticlassMetricsSuite implements unit tests for MulticlassMetrics Author: Alexander Ulanov <[email protected]> Author: unknown <[email protected]> Author: Xiangrui Meng <[email protected]> Closes apache#1155 from avulanov/master and squashes the following commits: 2eae80f [Alexander Ulanov] Merge pull request #1 from mengxr/avulanov-master 5ebeb08 [Xiangrui Meng] minor updates 79c3555 [Alexander Ulanov] Addressing reviewers comments mengxr 0fa9511 [Alexander Ulanov] Addressing reviewers comments mengxr f0dadc9 [Alexander Ulanov] Addressing reviewers comments mengxr 4811378 [Alexander Ulanov] Removing println 87fb11f [Alexander Ulanov] Addressing reviewers comments mengxr. Added confusion matrix e3db569 [Alexander Ulanov] Addressing reviewers comments mengxr. Added true positive rate and false positive rate. Test suite code style. a7e8bf0 [Alexander Ulanov] Addressing reviewers comments mengxr c3a77ad [Alexander Ulanov] Addressing reviewers comments mengxr e2c91c3 [Alexander Ulanov] Fixes to mutliclass metics d5ce981 [unknown] Comments about Double a5c8ba4 [unknown] Unit tests. Class rename fcee82d [unknown] Unit tests. Class rename d535d62 [unknown] Multiclass evaluation
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Jul 22, 2014
This pull request aims to resolve all outstanding PEP8 violations in PySpark. Author: Nicholas Chammas <[email protected]> Author: nchammas <[email protected]> Closes apache#1505 from nchammas/master and squashes the following commits: 98171af [Nicholas Chammas] [SPARK-2470] revert PEP 8 fixes to cloudpickle cba7768 [Nicholas Chammas] [SPARK-2470] wrap expression list in parentheses e178dbe [Nicholas Chammas] [SPARK-2470] style - change position of line break 9127d2b [Nicholas Chammas] [SPARK-2470] wrap expression lists in parentheses 22132a4 [Nicholas Chammas] [SPARK-2470] wrap conditionals in parentheses 24639bc [Nicholas Chammas] [SPARK-2470] fix whitespace for doctest 7d557b7 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to tests.py 8f8e4c0 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to storagelevel.py b3b96cf [Nicholas Chammas] [SPARK-2470] PEP8 fixes to statcounter.py d644477 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to worker.py aa3a7b6 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to sql.py 1916859 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to shell.py 95d1d95 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to serializers.py a0fec2e [Nicholas Chammas] [SPARK-2470] PEP8 fixes to mllib c85e1e5 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to join.py d14f2f1 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to __init__.py 81fcb20 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to resultiterable.py 1bde265 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to java_gateway.py 7fc849c [Nicholas Chammas] [SPARK-2470] PEP8 fixes to daemon.py ca2d28b [Nicholas Chammas] [SPARK-2470] PEP8 fixes to context.py f4e0039 [Nicholas Chammas] [SPARK-2470] PEP8 fixes to conf.py a6d5e4b [Nicholas Chammas] [SPARK-2470] PEP8 fixes to cloudpickle.py f0a7ebf [Nicholas Chammas] [SPARK-2470] PEP8 fixes to rddsampler.py 4dd148f [nchammas] Merge pull request #5 from apache/master f7e4581 [Nicholas Chammas] unrelated pep8 fix a36eed0 [Nicholas Chammas] name ec2 instances and security groups consistently de7292a [nchammas] Merge pull request #4 from apache/master 2e4fe00 [nchammas] Merge pull request #3 from apache/master 89fde08 [nchammas] Merge pull request #2 from apache/master 69f6e22 [Nicholas Chammas] PEP8 fixes 2627247 [Nicholas Chammas] broke up lines before they hit 100 chars 6544b7e [Nicholas Chammas] [SPARK-2065] give launched instances names 69da6cf [nchammas] Merge pull request #1 from apache/master
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Jul 31, 2014
… the current pu... ...sh model Currently Spark uses Flume's internal Avro Protocol to ingest data from Flume. If the executor running the receiver fails, it currently has to be restarted on the same node to be able to receive data. This commit adds a new Sink which can be deployed to a Flume agent. This sink can be polled by a new DStream that is also included in this commit. This model ensures that data can be pulled into Spark from Flume even if the receiver is restarted on a new node. This also allows the receiver to receive data on multiple threads for better performance. Author: Hari Shreedharan <[email protected]> Author: Hari Shreedharan <[email protected]> Author: Tathagata Das <[email protected]> Author: harishreedharan <[email protected]> Closes apache#807 from harishreedharan/master and squashes the following commits: e7f70a3 [Hari Shreedharan] Merge remote-tracking branch 'asf-git/master' 96cfb6f [Hari Shreedharan] Merge remote-tracking branch 'asf/master' e48d785 [Hari Shreedharan] Documenting flume-sink being ignored for Mima checks. 5f212ce [Hari Shreedharan] Ignore Spark Sink from mima. 981bf62 [Hari Shreedharan] Merge remote-tracking branch 'asf/master' 7a1bc6e [Hari Shreedharan] Fix SparkBuild.scala a082eb3 [Hari Shreedharan] Merge remote-tracking branch 'asf/master' 1f47364 [Hari Shreedharan] Minor fixes. 73d6f6d [Hari Shreedharan] Cleaned up tests a bit. Added some docs in multiple places. 65b76b4 [Hari Shreedharan] Fixing the unit test. e59cc20 [Hari Shreedharan] Use SparkFlumeEvent instead of the new type. Also, Flume Polling Receiver now uses the store(ArrayBuffer) method. f3c99d1 [Hari Shreedharan] Merge remote-tracking branch 'asf/master' 3572180 [Hari Shreedharan] Adding a license header, making Jenkins happy. 799509f [Hari Shreedharan] Fix a compile issue. 3c5194c [Hari Shreedharan] Merge remote-tracking branch 'asf/master' d248d22 [harishreedharan] Merge pull request #1 from tdas/flume-polling 10b6214 [Tathagata Das] Changed public API, changed sink package, and added java unit test to make sure Java API is callable from Java. 1edc806 [Hari Shreedharan] SPARK-1729. Update logging in Spark Sink. 8c00289 [Hari Shreedharan] More debug messages 393bd94 [Hari Shreedharan] SPARK-1729. Use LinkedBlockingQueue instead of ArrayBuffer to keep track of connections. 120e2a1 [Hari Shreedharan] SPARK-1729. Some test changes and changes to utils classes. 9fd0da7 [Hari Shreedharan] SPARK-1729. Use foreach instead of map for all Options. 8136aa6 [Hari Shreedharan] Adding TransactionProcessor to map on returning batch of data 86aa274 [Hari Shreedharan] Merge remote-tracking branch 'asf/master' 205034d [Hari Shreedharan] Merging master in 4b0c7fc [Hari Shreedharan] FLUME-1729. New Flume-Spark integration. bda01fc [Hari Shreedharan] FLUME-1729. Flume-Spark integration. 0d69604 [Hari Shreedharan] FLUME-1729. Better Flume-Spark integration. 3c23c18 [Hari Shreedharan] SPARK-1729. New Spark-Flume integration. 70bcc2a [Hari Shreedharan] SPARK-1729. New Flume-Spark integration. d6fa3aa [Hari Shreedharan] SPARK-1729. New Flume-Spark integration. e7da512 [Hari Shreedharan] SPARK-1729. Fixing import order 9741683 [Hari Shreedharan] SPARK-1729. Fixes based on review. c604a3c [Hari Shreedharan] SPARK-1729. Optimize imports. 0f10788 [Hari Shreedharan] SPARK-1729. Make Flume pull data from source, rather than the current push model 87775aa [Hari Shreedharan] SPARK-1729. Make Flume pull data from source, rather than the current push model 8df37e4 [Hari Shreedharan] SPARK-1729. Make Flume pull data from source, rather than the current push model 03d6c1c [Hari Shreedharan] SPARK-1729. Make Flume pull data from source, rather than the current push model 08176ad [Hari Shreedharan] SPARK-1729. Make Flume pull data from source, rather than the current push model d24d9d4 [Hari Shreedharan] SPARK-1729. Make Flume pull data from source, rather than the current push model 6d6776a [Hari Shreedharan] SPARK-1729. Make Flume pull data from source, rather than the current push model
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Aug 4, 2014
This is a pull request regarding SPARK-2510 at https://issues.apache.org/jira/browse/SPARK-2510. Word2Vec creates vector representation of words in a text corpus. The algorithm first constructs a vocabulary from the corpus and then learns vector representation of words in the vocabulary. The vector representation can be used as features in natural language processing and machine learning algorithms. To make our implementation more scalable, we train each partition separately and merge the model of each partition after each iteration. To make the model more accurate, multiple iterations may be needed. To investigate the vector representations is to find the closest words for a query word. For example, the top 20 closest words to "china" are for 1 partition and 1 iteration : taiwan 0.8077646146334014 korea 0.740913304563621 japan 0.7240667798885471 republic 0.7107151279078352 thailand 0.6953217332072862 tibet 0.6916782118129544 mongolia 0.6800858715972612 macau 0.6794925677480378 singapore 0.6594048695593799 manchuria 0.658989931844148 laos 0.6512978726001666 nepal 0.6380792327845325 mainland 0.6365469459587788 myanmar 0.6358614338840394 macedonia 0.6322366180313249 xinjiang 0.6285291551708028 russia 0.6279951236068411 india 0.6272874944023487 shanghai 0.6234544135576999 macao 0.6220588462925876 The result with 10 partitions and 5 iterations is: taiwan 0.8310495079388313 india 0.7737171315919039 japan 0.756777901233668 korea 0.7429767187102452 indonesia 0.7407557427278356 pakistan 0.712883426985585 mainland 0.7053379963140822 thailand 0.696298191073948 mongolia 0.693690656871415 laos 0.6913069680735292 macau 0.6903427690029617 republic 0.6766381604813666 malaysia 0.676460699141784 singapore 0.6728790997360923 malaya 0.672345232966194 manchuria 0.6703732292753156 macedonia 0.6637955686322028 myanmar 0.6589462882439646 kazakhstan 0.657017801081494 cambodia 0.6542383836451932 Author: Liquan Pei <[email protected]> Author: Xiangrui Meng <[email protected]> Author: Liquan Pei <[email protected]> Closes apache#1719 from Ishiihara/master and squashes the following commits: 2ba9483 [Liquan Pei] minor fix for Word2Vec test e248441 [Liquan Pei] minor style change 26a948d [Liquan Pei] Merge pull request #1 from mengxr/Ishiihara-master c14da41 [Xiangrui Meng] fix styles 384c771 [Xiangrui Meng] remove minCount and window from constructor change model to use float instead of double e93e726 [Liquan Pei] use treeAggregate instead of aggregate 1a8fb41 [Liquan Pei] use weighted sum in combOp 7efbb6f [Liquan Pei] use broadcast version of vocab in aggregate 6bcc8be [Liquan Pei] add multiple iteration support 720b5a3 [Liquan Pei] Add test for Word2Vec algorithm, minor fixes 2e92b59 [Liquan Pei] modify according to feedback 57dc50d [Liquan Pei] code formatting e4a04d3 [Liquan Pei] minor fix 0aafb1b [Liquan Pei] Add comments, minor fixes 8d6befe [Liquan Pei] initial commit
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Apr 29, 2015
…ontext This PR follow up PR apache#3907 & apache#3891 & apache#4356. According to marmbrus liancheng 's comments, I try to use fs.globStatus to retrieve all FileStatus objects under path(s), and then do the filtering locally. [1]. get pathPattern by path, and put it into pathPatternSet. (hdfs://cluster/user/demo/2016/08/12 -> hdfs://cluster/user/demo/*/*/*) [2]. retrieve all FileStatus objects ,and cache them by undating existPathSet. [3]. do the filtering locally [4]. if we have new pathPattern,do 1,2 step again. (external table maybe have more than one partition pathPattern) chenghao-intel jeanlyn Author: lazymam500 <[email protected]> Author: lazyman <[email protected]> Closes apache#5059 from lazyman500/SPARK-5068 and squashes the following commits: 5bfcbfd [lazyman] move spark.sql.hive.verifyPartitionPath to SQLConf,fix scala style e1d6386 [lazymam500] fix scala style f23133f [lazymam500] bug fix 47e0023 [lazymam500] fix scala style,add config flag,break the chaining 04c443c [lazyman] SPARK-5068: fix bug when partition path doesn't exists #2 41f60ce [lazymam500] Merge pull request #1 from apache/master
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… TRANSACTIONS" and "SHOW COMPACTIONS" [SHOW PRINCIPALS role_name] Lists all roles and users who belong to this role. Only the admin role has privilege for this. [SHOW COMPACTIONS] It returns a list of all tables and partitions currently being compacted or scheduled for compaction when Hive transactions are being used. [SHOW TRANSACTIONS] It is for use by administrators when Hive transactions are being used. It returns a list of all currently open and aborted transactions in the system. Author: DoingDone9 <[email protected]> Author: Zhongshuai Pei <[email protected]> Author: Xu Tingjun <[email protected]> Closes apache#4902 from DoingDone9/SHOW_PRINCIPALS and squashes the following commits: 4add42f [Zhongshuai Pei] for test 311f806 [Zhongshuai Pei] for test 0c7550a [DoingDone9] Update HiveQl.scala c8aeb1c [Xu Tingjun] aa 802261c [DoingDone9] Merge pull request #7 from apache/master d00303b [DoingDone9] Merge pull request #6 from apache/master 98b134f [DoingDone9] Merge pull request #5 from apache/master 161cae3 [DoingDone9] Merge pull request #4 from apache/master c87e8b6 [DoingDone9] Merge pull request #3 from apache/master cb1852d [DoingDone9] Merge pull request #2 from apache/master c3f046f [DoingDone9] Merge pull request #1 from apache/master
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SQL ``` select key from (select key from src limit 100) t2 limit 10 ``` Optimized Logical Plan before modifying ``` == Optimized Logical Plan == Limit 10 Limit 100 Project key#3 MetastoreRelation default, src, None ``` Optimized Logical Plan after modifying ``` == Optimized Logical Plan == Limit 10 Project [key#1] MetastoreRelation default, src, None ``` Author: Zhongshuai Pei <[email protected]> Author: DoingDone9 <[email protected]> Closes apache#5770 from DoingDone9/limitOptimizer and squashes the following commits: c68eaa7 [Zhongshuai Pei] Update CombiningLimitsSuite.scala 97e18cf [Zhongshuai Pei] Update Optimizer.scala 19ab875 [Zhongshuai Pei] Update CombiningLimitsSuite.scala 7db4566 [Zhongshuai Pei] Update CombiningLimitsSuite.scala e2a491d [Zhongshuai Pei] Update Optimizer.scala f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master f12fa50 [Zhongshuai Pei] Merge pull request #10 from apache/master f61210c [Zhongshuai Pei] Merge pull request #9 from apache/master 34b1a9a [Zhongshuai Pei] Merge pull request #8 from apache/master 802261c [DoingDone9] Merge pull request #7 from apache/master d00303b [DoingDone9] Merge pull request #6 from apache/master 98b134f [DoingDone9] Merge pull request #5 from apache/master 161cae3 [DoingDone9] Merge pull request #4 from apache/master c87e8b6 [DoingDone9] Merge pull request #3 from apache/master cb1852d [DoingDone9] Merge pull request #2 from apache/master c3f046f [DoingDone9] Merge pull request #1 from apache/master
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See PDF attached to the JIRA issue 1406. The contribution is my original work and I license the work to the project under the project's open source license. Author: Vincenzo Selvaggio <[email protected]> Author: Xiangrui Meng <[email protected]> Author: selvinsource <[email protected]> Closes apache#3062 from selvinsource/mllib_pmml_model_export_SPARK-1406 and squashes the following commits: 852aac6 [Vincenzo Selvaggio] [SPARK-1406] Update JPMML version to 1.1.15 in LICENSE file 085cf42 [Vincenzo Selvaggio] [SPARK-1406] Added Double Min and Max Fixed scala style 30165c4 [Vincenzo Selvaggio] [SPARK-1406] Fixed extreme cases for logit 7a5e0ec [Vincenzo Selvaggio] [SPARK-1406] Binary classification for SVM and Logistic Regression cfcb596 [Vincenzo Selvaggio] [SPARK-1406] Throw IllegalArgumentException when exporting a multinomial logistic regression 25dce33 [Vincenzo Selvaggio] [SPARK-1406] Update code to latest pmml model dea98ca [Vincenzo Selvaggio] [SPARK-1406] Exclude transitive dependency for pmml model 66b7c12 [Vincenzo Selvaggio] [SPARK-1406] Updated pmml model lib to 1.1.15, latest Java 6 compatible a0a55f7 [Vincenzo Selvaggio] Merge pull request #2 from mengxr/SPARK-1406 3c22f79 [Xiangrui Meng] more code style e2313df [Vincenzo Selvaggio] Merge pull request #1 from mengxr/SPARK-1406 472d757 [Xiangrui Meng] fix code style 1676e15 [Vincenzo Selvaggio] fixed scala issue e2ffae8 [Vincenzo Selvaggio] fixed scala style b8823b0 [Vincenzo Selvaggio] Merge remote-tracking branch 'upstream/master' into mllib_pmml_model_export_SPARK-1406 b25bbf7 [Vincenzo Selvaggio] [SPARK-1406] Added export of pmml to distributed file system using the spark context 7a949d0 [Vincenzo Selvaggio] [SPARK-1406] Fixed scala style f46c75c [Vincenzo Selvaggio] [SPARK-1406] Added PMMLExportable to supported models 7b33b4e [Vincenzo Selvaggio] [SPARK-1406] Added a PMMLExportable interface Restructured code in a new package mllib.pmml Supported models implements the new PMMLExportable interface: LogisticRegression, SVM, KMeansModel, LinearRegression, RidgeRegression, Lasso d559ec5 [Vincenzo Selvaggio] Merge remote-tracking branch 'upstream/master' into mllib_pmml_model_export_SPARK-1406 8fe12bb [Vincenzo Selvaggio] [SPARK-1406] Adjusted logistic regression export description and target categories 03bc3a5 [Vincenzo Selvaggio] added logistic regression da2ec11 [Vincenzo Selvaggio] [SPARK-1406] added linear SVM PMML export 82f2131 [Vincenzo Selvaggio] Merge remote-tracking branch 'upstream/master' into mllib_pmml_model_export_SPARK-1406 19adf29 [Vincenzo Selvaggio] [SPARK-1406] Fixed scala style 1faf985 [Vincenzo Selvaggio] [SPARK-1406] Added target field to the regression model for completeness Adjusted unit test to deal with this change 3ae8ae5 [Vincenzo Selvaggio] [SPARK-1406] Adjusted imported order according to the guidelines c67ce81 [Vincenzo Selvaggio] Merge remote-tracking branch 'upstream/master' into mllib_pmml_model_export_SPARK-1406 78515ec [Vincenzo Selvaggio] [SPARK-1406] added pmml export for LinearRegressionModel, RidgeRegressionModel and LassoModel e29dfb9 [Vincenzo Selvaggio] removed version, by default is set to 4.2 (latest from jpmml) removed copyright ae8b993 [Vincenzo Selvaggio] updated some commented tests to use the new ModelExporter object reordered the imports df8a89e [Vincenzo Selvaggio] added pmml version to pmml model changed the copyright to spark a1b4dc3 [Vincenzo Selvaggio] updated imports 834ca44 [Vincenzo Selvaggio] reordered the import accordingly to the guidelines 349a76b [Vincenzo Selvaggio] new helper object to serialize the models to pmml format c3ef9b8 [Vincenzo Selvaggio] set it to private 6357b98 [Vincenzo Selvaggio] set it to private e1eb251 [Vincenzo Selvaggio] removed serialization part, this will be part of the ModelExporter helper object aba5ee1 [Vincenzo Selvaggio] fixed cluster export cd6c07c [Vincenzo Selvaggio] fixed scala style to run tests f75b988 [Vincenzo Selvaggio] Merge remote-tracking branch 'origin/master' into mllib_pmml_model_export_SPARK-1406 07a29bf [selvinsource] Update LICENSE 8841439 [Vincenzo Selvaggio] adjust scala style in order to compile 1433b11 [Vincenzo Selvaggio] complete suite tests 8e71b8d [Vincenzo Selvaggio] kmeans pmml export implementation 9bc494f [Vincenzo Selvaggio] added scala suite tests added saveLocalFile to ModelExport trait 226e184 [Vincenzo Selvaggio] added javadoc and export model type in case there is a need to support other types of export (not just PMML) a0e3679 [Vincenzo Selvaggio] export and pmml export traits kmeans test implementation
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SQL ``` select key from (select key,value from t1 limit 100) t2 limit 10 ``` Optimized Logical Plan before modifying ``` == Optimized Logical Plan == Limit 10 Project key#228 Limit 100 MetastoreRelation default, t1, None ``` Optimized Logical Plan after modifying ``` == Optimized Logical Plan == Limit 10 Limit 100 Project key#228 MetastoreRelation default, t1, None ``` After this, we can combine limits Author: Zhongshuai Pei <[email protected]> Author: DoingDone9 <[email protected]> Closes apache#5797 from DoingDone9/ProjectLimit and squashes the following commits: 70d0fca [Zhongshuai Pei] Update FilterPushdownSuite.scala dc83ae9 [Zhongshuai Pei] Update FilterPushdownSuite.scala 485c61c [Zhongshuai Pei] Update Optimizer.scala f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master f12fa50 [Zhongshuai Pei] Merge pull request #10 from apache/master f61210c [Zhongshuai Pei] Merge pull request #9 from apache/master 34b1a9a [Zhongshuai Pei] Merge pull request #8 from apache/master 802261c [DoingDone9] Merge pull request #7 from apache/master d00303b [DoingDone9] Merge pull request #6 from apache/master 98b134f [DoingDone9] Merge pull request #5 from apache/master 161cae3 [DoingDone9] Merge pull request #4 from apache/master c87e8b6 [DoingDone9] Merge pull request #3 from apache/master cb1852d [DoingDone9] Merge pull request #2 from apache/master c3f046f [DoingDone9] Merge pull request #1 from apache/master
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JIRA: https://issues.apache.org/jira/browse/SPARK-5563 The PR contains the implementation for [Online LDA] (https://www.cs.princeton.edu/~blei/papers/HoffmanBleiBach2010b.pdf) based on the research of Matt Hoffman and David M. Blei, which provides an efficient option for LDA users. Major advantages for the algorithm are the stream compatibility and economic time/memory consumption due to the corpus split. For more details, please refer to the jira. Online LDA can act as a fast option for LDA, and will be especially helpful for the users who needs a quick result or with large corpus. Correctness test. I have tested current PR with https://github.com/Blei-Lab/onlineldavb and the results are identical. I've uploaded the result and code to https://github.com/hhbyyh/LDACrossValidation. Author: Yuhao Yang <[email protected]> Author: Joseph K. Bradley <[email protected]> Closes apache#4419 from hhbyyh/ldaonline and squashes the following commits: 1045eec [Yuhao Yang] Merge pull request #2 from jkbradley/hhbyyh-ldaonline2 cf376ff [Joseph K. Bradley] For private vars needed for testing, I made them private and added accessors. Java doesn’t understand package-private tags, so this minimizes the issues Java users might encounter. 6149ca6 [Yuhao Yang] fix for setOptimizer cf0007d [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline 54cf8da [Yuhao Yang] some style change 68c2318 [Yuhao Yang] add a java ut 4041723 [Yuhao Yang] add ut 138bfed [Yuhao Yang] Merge pull request #1 from jkbradley/hhbyyh-ldaonline-update 9e910d9 [Joseph K. Bradley] small fix 61d60df [Joseph K. Bradley] Minor cleanups: * Update *Concentration parameter documentation * EM Optimizer: createVertices() does not need to be a function * OnlineLDAOptimizer: typos in doc * Clean up the core code for online LDA (Scala style) a996a82 [Yuhao Yang] respond to comments b1178cf [Yuhao Yang] fit into the optimizer framework dbe3cff [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline 15be071 [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline b29193b [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline d19ef55 [Yuhao Yang] change OnlineLDA to class 97b9e1a [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline e7bf3b0 [Yuhao Yang] move to seperate file f367cc9 [Yuhao Yang] change to optimization 8cb16a6 [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline 62405cc [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline 02d0373 [Yuhao Yang] fix style in comment f6d47ca [Yuhao Yang] Merge branch 'ldaonline' of https://github.com/hhbyyh/spark into ldaonline d86cdec [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline a570c9a [Yuhao Yang] use sample to pick up batch 4a3f27e [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline e271eb1 [Yuhao Yang] remove non ascii 581c623 [Yuhao Yang] seperate API and adjust batch split 37af91a [Yuhao Yang] iMerge remote-tracking branch 'upstream/master' into ldaonline 20328d1 [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline i aa365d1 [Yuhao Yang] merge upstream master 3a06526 [Yuhao Yang] merge with new example 0dd3947 [Yuhao Yang] kMerge remote-tracking branch 'upstream/master' into ldaonline 0d0f3ee [Yuhao Yang] replace random split with sliding fa408a8 [Yuhao Yang] ssMerge remote-tracking branch 'upstream/master' into ldaonline 45884ab [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline s f41c5ca [Yuhao Yang] style fix 26dca1b [Yuhao Yang] style fix and make class private 043e786 [Yuhao Yang] Merge remote-tracking branch 'upstream/master' into ldaonline s Conflicts: mllib/src/main/scala/org/apache/spark/mllib/clustering/LDA.scala d640d9c [Yuhao Yang] online lda initial checkin
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…" into true or false directly SQL ``` select key from src where 3 in (4, 5); ``` Before ``` == Optimized Logical Plan == Project [key#12] Filter 3 INSET (5,4) MetastoreRelation default, src, None ``` After ``` == Optimized Logical Plan == LocalRelation [key#228], [] ``` Author: Zhongshuai Pei <[email protected]> Author: DoingDone9 <[email protected]> Closes apache#5972 from DoingDone9/InToFalse and squashes the following commits: 4c722a2 [Zhongshuai Pei] Update predicates.scala abe2bbb [Zhongshuai Pei] Update Optimizer.scala fa461a5 [Zhongshuai Pei] Update Optimizer.scala e34c28a [Zhongshuai Pei] Update predicates.scala 24739bd [Zhongshuai Pei] Update ConstantFoldingSuite.scala f4dbf50 [Zhongshuai Pei] Update ConstantFoldingSuite.scala 35ceb7a [Zhongshuai Pei] Update Optimizer.scala 36c194e [Zhongshuai Pei] Update Optimizer.scala 2e8f6ca [Zhongshuai Pei] Update Optimizer.scala 14952e2 [Zhongshuai Pei] Merge pull request apache#13 from apache/master f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master f12fa50 [Zhongshuai Pei] Merge pull request #10 from apache/master f61210c [Zhongshuai Pei] Merge pull request #9 from apache/master 34b1a9a [Zhongshuai Pei] Merge pull request #8 from apache/master 802261c [DoingDone9] Merge pull request #7 from apache/master d00303b [DoingDone9] Merge pull request #6 from apache/master 98b134f [DoingDone9] Merge pull request #5 from apache/master 161cae3 [DoingDone9] Merge pull request #4 from apache/master c87e8b6 [DoingDone9] Merge pull request #3 from apache/master cb1852d [DoingDone9] Merge pull request #2 from apache/master c3f046f [DoingDone9] Merge pull request #1 from apache/master
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…cala and pySpark Author: Joshi <[email protected]> Author: Rekha Joshi <[email protected]> Closes apache#5989 from rekhajoshm/fix/SPARK-7435 and squashes the following commits: cfc9e02 [Joshi] Spark-7435[R]: updated patch for review comments 62becc1 [Joshi] SPARK-7435: Update to DataFrame e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master
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…at has space in its path escape spaces in the arguments. Author: Masayoshi TSUZUKI <[email protected]> Author: Kousuke Saruta <[email protected]> Closes apache#5447 from tsudukim/feature/SPARK-6568-2 and squashes the following commits: 3f9a188 [Masayoshi TSUZUKI] modified some errors. ed46047 [Masayoshi TSUZUKI] avoid scalastyle errors. 1784239 [Masayoshi TSUZUKI] removed Utils.formatPath. e03f289 [Masayoshi TSUZUKI] removed testWindows from Utils.resolveURI and Utils.resolveURIs. replaced SystemUtils.IS_OS_WINDOWS to Utils.isWindows. removed Utils.formatPath from PythonRunner.scala. 84c33d0 [Masayoshi TSUZUKI] - use resolveURI in nonLocalPaths - run tests for Windows path only on Windows 016128d [Masayoshi TSUZUKI] fixed to use File.toURI() 2c62e3b [Masayoshi TSUZUKI] Merge pull request #1 from sarutak/SPARK-6568-2 7019a8a [Masayoshi TSUZUKI] Merge branch 'master' of https://github.com/apache/spark into feature/SPARK-6568-2 45946ee [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into SPARK-6568-2 10f1c73 [Kousuke Saruta] Added a comment 93c3c40 [Kousuke Saruta] Merge branch 'classpath-handling-fix' of github.com:sarutak/spark into SPARK-6568-2 649da82 [Kousuke Saruta] Fix classpath handling c7ba6a7 [Masayoshi TSUZUKI] [SPARK-6568] spark-shell.cmd --jars option does not accept the jar that has space in its path
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…" into true or false directly SQL ``` select key from src where 3 in (4, 5); ``` Before ``` == Optimized Logical Plan == Project [key#12] Filter 3 INSET (5,4) MetastoreRelation default, src, None ``` After ``` == Optimized Logical Plan == LocalRelation [key#228], [] ``` Author: Zhongshuai Pei <[email protected]> Author: DoingDone9 <[email protected]> Closes apache#5972 from DoingDone9/InToFalse and squashes the following commits: 4c722a2 [Zhongshuai Pei] Update predicates.scala abe2bbb [Zhongshuai Pei] Update Optimizer.scala fa461a5 [Zhongshuai Pei] Update Optimizer.scala e34c28a [Zhongshuai Pei] Update predicates.scala 24739bd [Zhongshuai Pei] Update ConstantFoldingSuite.scala f4dbf50 [Zhongshuai Pei] Update ConstantFoldingSuite.scala 35ceb7a [Zhongshuai Pei] Update Optimizer.scala 36c194e [Zhongshuai Pei] Update Optimizer.scala 2e8f6ca [Zhongshuai Pei] Update Optimizer.scala 14952e2 [Zhongshuai Pei] Merge pull request apache#13 from apache/master f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master f12fa50 [Zhongshuai Pei] Merge pull request #10 from apache/master f61210c [Zhongshuai Pei] Merge pull request #9 from apache/master 34b1a9a [Zhongshuai Pei] Merge pull request #8 from apache/master 802261c [DoingDone9] Merge pull request #7 from apache/master d00303b [DoingDone9] Merge pull request #6 from apache/master 98b134f [DoingDone9] Merge pull request #5 from apache/master 161cae3 [DoingDone9] Merge pull request #4 from apache/master c87e8b6 [DoingDone9] Merge pull request #3 from apache/master cb1852d [DoingDone9] Merge pull request #2 from apache/master c3f046f [DoingDone9] Merge pull request #1 from apache/master (cherry picked from commit 4b5e1fe) Signed-off-by: Michael Armbrust <[email protected]>
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…cala and pySpark Author: Joshi <[email protected]> Author: Rekha Joshi <[email protected]> Closes apache#5989 from rekhajoshm/fix/SPARK-7435 and squashes the following commits: cfc9e02 [Joshi] Spark-7435[R]: updated patch for review comments 62becc1 [Joshi] SPARK-7435: Update to DataFrame e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master (cherry picked from commit b94a933) Signed-off-by: Shivaram Venkataraman <[email protected]>
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…at has space in its path escape spaces in the arguments. Author: Masayoshi TSUZUKI <[email protected]> Author: Kousuke Saruta <[email protected]> Closes apache#5447 from tsudukim/feature/SPARK-6568-2 and squashes the following commits: 3f9a188 [Masayoshi TSUZUKI] modified some errors. ed46047 [Masayoshi TSUZUKI] avoid scalastyle errors. 1784239 [Masayoshi TSUZUKI] removed Utils.formatPath. e03f289 [Masayoshi TSUZUKI] removed testWindows from Utils.resolveURI and Utils.resolveURIs. replaced SystemUtils.IS_OS_WINDOWS to Utils.isWindows. removed Utils.formatPath from PythonRunner.scala. 84c33d0 [Masayoshi TSUZUKI] - use resolveURI in nonLocalPaths - run tests for Windows path only on Windows 016128d [Masayoshi TSUZUKI] fixed to use File.toURI() 2c62e3b [Masayoshi TSUZUKI] Merge pull request #1 from sarutak/SPARK-6568-2 7019a8a [Masayoshi TSUZUKI] Merge branch 'master' of https://github.com/apache/spark into feature/SPARK-6568-2 45946ee [Kousuke Saruta] Merge branch 'master' of git://git.apache.org/spark into SPARK-6568-2 10f1c73 [Kousuke Saruta] Added a comment 93c3c40 [Kousuke Saruta] Merge branch 'classpath-handling-fix' of github.com:sarutak/spark into SPARK-6568-2 649da82 [Kousuke Saruta] Fix classpath handling c7ba6a7 [Masayoshi TSUZUKI] [SPARK-6568] spark-shell.cmd --jars option does not accept the jar that has space in its path (cherry picked from commit 50c7270) Signed-off-by: Sean Owen <[email protected]>
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Jun 17, 2015
…into a single batch. SQL ``` select * from tableA join tableB on (a > 3 and b = d) or (a > 3 and b = e) ``` Plan before modify ``` == Optimized Logical Plan == Project [a#293,b#294,c#295,d#296,e#297] Join Inner, Some(((a#293 > 3) && ((b#294 = d#296) || (b#294 = e#297)))) MetastoreRelation default, tablea, None MetastoreRelation default, tableb, None ``` Plan after modify ``` == Optimized Logical Plan == Project [a#293,b#294,c#295,d#296,e#297] Join Inner, Some(((b#294 = d#296) || (b#294 = e#297))) Filter (a#293 > 3) MetastoreRelation default, tablea, None MetastoreRelation default, tableb, None ``` CombineLimits ==> Limit(If(LessThan(ne, le), ne, le), grandChild) and LessThan is in BooleanSimplification , so CombineLimits must before BooleanSimplification and BooleanSimplification must before PushPredicateThroughJoin. Author: Zhongshuai Pei <[email protected]> Author: DoingDone9 <[email protected]> Closes apache#6351 from DoingDone9/master and squashes the following commits: 20de7be [Zhongshuai Pei] Update Optimizer.scala 7bc7d28 [Zhongshuai Pei] Merge pull request apache#17 from apache/master 0ba5f42 [Zhongshuai Pei] Update Optimizer.scala f8b9314 [Zhongshuai Pei] Update FilterPushdownSuite.scala c529d9f [Zhongshuai Pei] Update FilterPushdownSuite.scala ae3af6d [Zhongshuai Pei] Update FilterPushdownSuite.scala a04ffae [Zhongshuai Pei] Update Optimizer.scala 11beb61 [Zhongshuai Pei] Update FilterPushdownSuite.scala f2ee5fe [Zhongshuai Pei] Update Optimizer.scala be6b1d5 [Zhongshuai Pei] Update Optimizer.scala b01e622 [Zhongshuai Pei] Merge pull request apache#15 from apache/master 8df716a [Zhongshuai Pei] Update FilterPushdownSuite.scala d98bc35 [Zhongshuai Pei] Update FilterPushdownSuite.scala fa65718 [Zhongshuai Pei] Update Optimizer.scala ab8e9a6 [Zhongshuai Pei] Merge pull request apache#14 from apache/master 14952e2 [Zhongshuai Pei] Merge pull request apache#13 from apache/master f03fe7f [Zhongshuai Pei] Merge pull request apache#12 from apache/master f12fa50 [Zhongshuai Pei] Merge pull request #10 from apache/master f61210c [Zhongshuai Pei] Merge pull request #9 from apache/master 34b1a9a [Zhongshuai Pei] Merge pull request #8 from apache/master 802261c [DoingDone9] Merge pull request #7 from apache/master d00303b [DoingDone9] Merge pull request #6 from apache/master 98b134f [DoingDone9] Merge pull request #5 from apache/master 161cae3 [DoingDone9] Merge pull request #4 from apache/master c87e8b6 [DoingDone9] Merge pull request #3 from apache/master cb1852d [DoingDone9] Merge pull request #2 from apache/master c3f046f [DoingDone9] Merge pull request #1 from apache/master
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Jun 24, 2015
…columns are found This PR improves the error message shown when conflicting partition column names are detected. This can be particularly annoying and confusing when there are a large number of partitions while a handful of them happened to contain unexpected temporary file(s). Now all suspicious directories are listed as below: ``` java.lang.AssertionError: assertion failed: Conflicting partition column names detected: Partition column name list #0: b, c, d Partition column name list #1: b, c Partition column name list #2: b For partitioned table directories, data files should only live in leaf directories. Please check the following directories for unexpected files: file:/tmp/foo/b=0 file:/tmp/foo/b=1 file:/tmp/foo/b=1/c=1 file:/tmp/foo/b=0/c=0 ``` Author: Cheng Lian <[email protected]> Closes apache#6610 from liancheng/part-errmsg and squashes the following commits: 7d05f2c [Cheng Lian] Fixes Scala style issue a149250 [Cheng Lian] Adds test case for the error message 6b74dd8 [Cheng Lian] Also lists suspicious non-leaf partition directories a935eb8 [Cheng Lian] Improves error message when conflicting partition columns are found
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Jun 28, 2015
… to ShuffleReader This commit updates the shuffle read path to enable ShuffleReader implementations more control over the deserialization process. The BlockStoreShuffleFetcher.fetch() method has been renamed to BlockStoreShuffleFetcher.fetchBlockStreams(). Previously, this method returned a record iterator; now, it returns an iterator of (BlockId, InputStream). Deserialization of records is now handled in the ShuffleReader.read() method. This change creates a cleaner separation of concerns and allows implementations of ShuffleReader more flexibility in how records are retrieved. Author: Matt Massie <[email protected]> Author: Kay Ousterhout <[email protected]> Closes apache#6423 from massie/shuffle-api-cleanup and squashes the following commits: 8b0632c [Matt Massie] Minor Scala style fixes d0a1b39 [Matt Massie] Merge pull request #1 from kayousterhout/massie_shuffle-api-cleanup 290f1eb [Kay Ousterhout] Added test for HashShuffleReader.read() 5186da0 [Kay Ousterhout] Revert "Add test to ensure HashShuffleReader is freeing resources" f98a1b9 [Matt Massie] Add test to ensure HashShuffleReader is freeing resources a011bfa [Matt Massie] Use PrivateMethodTester on check that delegate stream is closed 4ea1712 [Matt Massie] Small code cleanup for readability 7429a98 [Matt Massie] Update tests to check that BufferReleasingStream is closing delegate InputStream f458489 [Matt Massie] Remove unnecessary map() on return Iterator 4abb855 [Matt Massie] Consolidate metric code. Make it clear why InterrubtibleIterator is needed. 5c30405 [Matt Massie] Return visibility of BlockStoreShuffleFetcher to private[hash] 7eedd1d [Matt Massie] Small Scala import cleanup 28f8085 [Matt Massie] Small import nit f93841e [Matt Massie] Update shuffle read metrics in ShuffleReader instead of BlockStoreShuffleFetcher. 7e8e0fe [Matt Massie] Minor Scala style fixes 01e8721 [Matt Massie] Explicitly cast iterator in branches for type clarity 7c8f73e [Matt Massie] Close Block InputStream immediately after all records are read 208b7a5 [Matt Massie] Small code style changes b70c945 [Matt Massie] Make BlockStoreShuffleFetcher visible to shuffle package 19135f2 [Matt Massie] [SPARK-7884] Allow Spark shuffle APIs to be more customizable
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Jun 28, 2015
Fix for incorrect memory in Spark UI as per SPARK-5768 Author: Joshi <[email protected]> Author: Rekha Joshi <[email protected]> Closes apache#6972 from rekhajoshm/SPARK-5768 and squashes the following commits: b678a91 [Joshi] Fix for incorrect memory in Spark UI 2fe53d9 [Joshi] Fix for incorrect memory in Spark UI eb823b8 [Joshi] SPARK-5768: Fix for incorrect memory in Spark UI 0be142d [Rekha Joshi] Merge pull request #3 from apache/master 106fd8e [Rekha Joshi] Merge pull request #2 from apache/master e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master
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Jun 30, 2015
Fix for incorrect memory in Spark UI as per SPARK-5768 Author: Joshi <[email protected]> Author: Rekha Joshi <[email protected]> Closes apache#6972 from rekhajoshm/SPARK-5768 and squashes the following commits: b678a91 [Joshi] Fix for incorrect memory in Spark UI 2fe53d9 [Joshi] Fix for incorrect memory in Spark UI eb823b8 [Joshi] SPARK-5768: Fix for incorrect memory in Spark UI 0be142d [Rekha Joshi] Merge pull request #3 from apache/master 106fd8e [Rekha Joshi] Merge pull request #2 from apache/master e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master (cherry picked from commit 085a721) Signed-off-by: Kousuke Saruta <[email protected]>
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Jul 1, 2015
… without side effects. Fix for SparkContext stop behavior - Allow sc.stop() to be called multiple times without side effects. Author: Joshi <[email protected]> Author: Rekha Joshi <[email protected]> Closes apache#6973 from rekhajoshm/SPARK-2645 and squashes the following commits: 277043e [Joshi] Fix for SparkContext stop behavior 446b0a4 [Joshi] Fix for SparkContext stop behavior 2ce5760 [Joshi] Fix for SparkContext stop behavior c97839a [Joshi] Fix for SparkContext stop behavior 1aff39c [Joshi] Fix for SparkContext stop behavior 12f66b5 [Joshi] Fix for SparkContext stop behavior 72bb484 [Joshi] Fix for SparkContext stop behavior a5a7d7f [Joshi] Fix for SparkContext stop behavior 9193a0c [Joshi] Fix for SparkContext stop behavior 58dba70 [Joshi] SPARK-2645: Fix for SparkContext stop behavior 380c5b0 [Joshi] SPARK-2645: Fix for SparkContext stop behavior b566b66 [Joshi] SPARK-2645: Fix for SparkContext stop behavior 0be142d [Rekha Joshi] Merge pull request #3 from apache/master 106fd8e [Rekha Joshi] Merge pull request #2 from apache/master e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master
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Jul 7, 2015
…nfo if needed Author: Joshi <[email protected]> Author: Rekha Joshi <[email protected]> Closes apache#5992 from rekhajoshm/fix/SPARK-7137 and squashes the following commits: 8c42b57 [Joshi] update checkInputColumn to print more info if needed 33ddd2e [Joshi] update checkInputColumn to print more info if needed acf3e17 [Joshi] update checkInputColumn to print more info if needed 8993c0e [Joshi] SPARK-7137: Add checkInputColumn back to Params and print more info e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master
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Jul 14, 2015
…mands This will allow problems with piped commands to be detected. This will also allow tasks to be retried where errors are rare (such as network problems in piped commands). Author: Scott Taylor <[email protected]> Closes apache#6262 from megatron-me-uk/patch-2 and squashes the following commits: 04ae1d5 [Scott Taylor] Remove spurious empty line 98fa101 [Scott Taylor] fix blank line style error 574b564 [Scott Taylor] Merge pull request #2 from megatron-me-uk/patch-4 0c1e762 [Scott Taylor] Update rdd pipe method for checkCode ab9a2e1 [Scott Taylor] Update rdd pipe tests for checkCode eb4801c [Scott Taylor] fix fail_condition b0ac3a4 [Scott Taylor] Merge pull request #1 from megatron-me-uk/megatron-me-uk-patch-1 a307d13 [Scott Taylor] update rdd tests to test pipe modes 34fcdc3 [Scott Taylor] add optional argument 'mode' for rdd.pipe a0c0161 [Scott Taylor] fix generator issue 8a9ef9c [Scott Taylor] make check_return_code an iterator 0486ae3 [Scott Taylor] style fixes 8ed89a6 [Scott Taylor] Chain generators to prevent potential deadlock 4153b02 [Scott Taylor] fix list.sort returns None 491d3fc [Scott Taylor] Pass a function handle to assertRaises 3344a21 [Scott Taylor] wrap assertRaises with QuietTest 3ab8c7a [Scott Taylor] remove whitespace for style cc1a73d [Scott Taylor] fix style issues in pipe test 8db4073 [Scott Taylor] Add a test for rdd pipe functions 1b3dc4e [Scott Taylor] fix missing space around operator style 0974f98 [Scott Taylor] add space between words in multiline string 45f4977 [Scott Taylor] fix line too long style error 5745d85 [Scott Taylor] Remove space to fix style f552d49 [Scott Taylor] Catch non-zero exit from pipe commands
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Jul 16, 2015
Improves the performance of LocalPrefixSpan by implementing optimizations proposed in [SPARK-8997](https://issues.apache.org/jira/browse/SPARK-8997) Author: Feynman Liang <[email protected]> Author: Feynman Liang <[email protected]> Author: Xiangrui Meng <[email protected]> Closes apache#7360 from feynmanliang/SPARK-8997-improve-prefixspan and squashes the following commits: 59db2f5 [Feynman Liang] Merge pull request #1 from mengxr/SPARK-8997 91e4357 [Xiangrui Meng] update LocalPrefixSpan impl 9212256 [Feynman Liang] MengXR code review comments f055d82 [Feynman Liang] Fix failing scalatest 2e00cba [Feynman Liang] Depth first projections 70b93e3 [Feynman Liang] Performance improvements in LocalPrefixSpan, fix tests
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Jul 19, 2015
This makes sure attempts are listed in the order they were executed, and that the app's state matches the state of the most current attempt. Author: Joshi <[email protected]> Author: Rekha Joshi <[email protected]> Closes apache#7253 from rekhajoshm/SPARK-8593 and squashes the following commits: 874dd80 [Joshi] History Server: updated order for multiple attempts(logcleaner) 716e0b1 [Joshi] History Server: updated order for multiple attempts(descending start time works everytime) 548c753 [Joshi] History Server: updated order for multiple attempts(descending start time works everytime) 83306a8 [Joshi] History Server: updated order for multiple attempts(descending start time) b0fc922 [Joshi] History Server: updated order for multiple attempts(updated comment) cc0fda7 [Joshi] History Server: updated order for multiple attempts(updated test) 304cb0b [Joshi] History Server: updated order for multiple attempts(reverted HistoryPage) 85024e8 [Joshi] History Server: updated order for multiple attempts a41ac4b [Joshi] History Server: updated order for multiple attempts ab65fa1 [Joshi] History Server: some attempt completed to work with showIncomplete 0be142d [Rekha Joshi] Merge pull request #3 from apache/master 106fd8e [Rekha Joshi] Merge pull request #2 from apache/master e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master
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Jul 19, 2015
Implement IntArrayParam in mllib Author: Rekha Joshi <[email protected]> Author: Joshi <[email protected]> Closes apache#7481 from rekhajoshm/SPARK-9118 and squashes the following commits: d3b1766 [Joshi] Implement IntArrayParam 0be142d [Rekha Joshi] Merge pull request #3 from apache/master 106fd8e [Rekha Joshi] Merge pull request #2 from apache/master e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master
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Jul 21, 2015
Modifying Vector, DenseVector, and SparseVector to implement argmax functionality. This work is to set the stage for changes to be done in Spark-7423. Author: George Dittmar <[email protected]> Author: George <[email protected]> Author: dittmarg <[email protected]> Author: Xiangrui Meng <[email protected]> Closes apache#6112 from GeorgeDittmar/SPARK-7422 and squashes the following commits: 3e0a939 [George Dittmar] Merge pull request #1 from mengxr/SPARK-7422 127dec5 [Xiangrui Meng] update argmax impl 2ea6a55 [George Dittmar] Added MimaExcludes for Vectors.argmax 98058f4 [George Dittmar] Merge branch 'master' of github.com:apache/spark into SPARK-7422 5fd9380 [George Dittmar] fixing style check error 42341fb [George Dittmar] refactoring arg max check to better handle zero values b22af46 [George Dittmar] Fixing spaces between commas in unit test f2eba2f [George Dittmar] Cleaning up unit tests to be fewer lines aa330e3 [George Dittmar] Fixing some last if else spacing issues ac53c55 [George Dittmar] changing dense vector argmax unit test to be one line call vs 2 d5b5423 [George Dittmar] Fixing code style and updating if logic on when to check for zero values ee1a85a [George Dittmar] Cleaning up unit tests a bit and modifying a few cases 3ee8711 [George Dittmar] Fixing corner case issue with zeros in the active values of the sparse vector. Updated unit tests b1f059f [George Dittmar] Added comment before we start arg max calculation. Updated unit tests to cover corner cases f21dcce [George Dittmar] commit af17981 [dittmarg] Initial work fixing bug that was made clear in pr eeda560 [George] Fixing SparseVector argmax function to ignore zero values while doing the calculation. 4526acc [George] Merge branch 'master' of github.com:apache/spark into SPARK-7422 df9538a [George] Added argmax to sparse vector and added unit test 3cffed4 [George] Adding unit tests for argmax functions for Dense and Sparse vectors 04677af [George] initial work on adding argmax to Vector and SparseVector
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Jul 27, 2015
This makes sure attempts are listed in the order they were executed, and that the app's state matches the state of the most current attempt. Author: Joshi <[email protected]> Author: Rekha Joshi <[email protected]> Closes apache#7253 from rekhajoshm/SPARK-8593 and squashes the following commits: 874dd80 [Joshi] History Server: updated order for multiple attempts(logcleaner) 716e0b1 [Joshi] History Server: updated order for multiple attempts(descending start time works everytime) 548c753 [Joshi] History Server: updated order for multiple attempts(descending start time works everytime) 83306a8 [Joshi] History Server: updated order for multiple attempts(descending start time) b0fc922 [Joshi] History Server: updated order for multiple attempts(updated comment) cc0fda7 [Joshi] History Server: updated order for multiple attempts(updated test) 304cb0b [Joshi] History Server: updated order for multiple attempts(reverted HistoryPage) 85024e8 [Joshi] History Server: updated order for multiple attempts a41ac4b [Joshi] History Server: updated order for multiple attempts ab65fa1 [Joshi] History Server: some attempt completed to work with showIncomplete 0be142d [Rekha Joshi] Merge pull request #3 from apache/master 106fd8e [Rekha Joshi] Merge pull request #2 from apache/master e3677c9 [Rekha Joshi] Merge pull request #1 from apache/master (cherry picked from commit 42d8a01) Signed-off-by: Sean Owen <[email protected]>
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Jul 31, 2015
…ected databases Continuation of work by zhangjiajin Closes apache#7412 Author: zhangjiajin <[email protected]> Author: Feynman Liang <[email protected]> Author: zhang jiajin <[email protected]> Closes apache#7783 from feynmanliang/SPARK-8998-improve-distributed and squashes the following commits: a61943d [Feynman Liang] Collect small patterns to local 4ddf479 [Feynman Liang] Parallelize freqItemCounts ad23aa9 [zhang jiajin] Merge pull request #1 from feynmanliang/SPARK-8998-collectBeforeLocal 87fa021 [Feynman Liang] Improve extend prefix readability c2caa5c [Feynman Liang] Readability improvements and comments 1235cfc [Feynman Liang] Use Iterable[Array[_]] over Array[Array[_]] for database da0091b [Feynman Liang] Use lists for prefixes to reuse data cb2a4fc [Feynman Liang] Inline code for readability 01c9ae9 [Feynman Liang] Add getters 6e149fa [Feynman Liang] Fix splitPrefixSuffixPairs 64271b3 [zhangjiajin] Modified codes according to comments. d2250b7 [zhangjiajin] remove minPatternsBeforeLocalProcessing, add maxSuffixesBeforeLocalProcessing. b07e20c [zhangjiajin] Merge branch 'master' of https://github.com/apache/spark into CollectEnoughPrefixes 095aa3a [zhangjiajin] Modified the code according to the review comments. baa2885 [zhangjiajin] Modified the code according to the review comments. 6560c69 [zhangjiajin] Add feature: Collect enough frequent prefixes before projection in PrefixeSpan a8fde87 [zhangjiajin] Merge branch 'master' of https://github.com/apache/spark 4dd1c8a [zhangjiajin] initialize file before rebase. 078d410 [zhangjiajin] fix a scala style error. 22b0ef4 [zhangjiajin] Add feature: Collect enough frequent prefixes before projection in PrefixSpan. ca9c4c8 [zhangjiajin] Modified the code according to the review comments. 574e56c [zhangjiajin] Add new object LocalPrefixSpan, and do some optimization. ba5df34 [zhangjiajin] Fix a Scala style error. 4c60fb3 [zhangjiajin] Fix some Scala style errors. 1dd33ad [zhangjiajin] Modified the code according to the review comments. 89bc368 [zhangjiajin] Fixed a Scala style error. a2eb14c [zhang jiajin] Delete PrefixspanSuite.scala 951fd42 [zhang jiajin] Delete Prefixspan.scala 575995f [zhangjiajin] Modified the code according to the review comments. 91fd7e6 [zhangjiajin] Add new algorithm PrefixSpan and test file.
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Aug 11, 2015
This PR is based on apache#4229, thanks prabeesh. Closes apache#4229 Author: Prabeesh K <[email protected]> Author: zsxwing <[email protected]> Author: prabs <[email protected]> Author: Prabeesh K <[email protected]> Closes apache#7833 from zsxwing/pr4229 and squashes the following commits: 9570bec [zsxwing] Fix the variable name and check null in finally 4a9c79e [zsxwing] Fix pom.xml indentation abf5f18 [zsxwing] Merge branch 'master' into pr4229 935615c [zsxwing] Fix the flaky MQTT tests 47278c5 [zsxwing] Include the project class files 478f844 [zsxwing] Add unpack 5f8a1d4 [zsxwing] Make the maven build generate the test jar for Python MQTT tests 734db99 [zsxwing] Merge branch 'master' into pr4229 126608a [Prabeesh K] address the comments b90b709 [Prabeesh K] Merge pull request #1 from zsxwing/pr4229 d07f454 [zsxwing] Register StreamingListerner before starting StreamingContext; Revert unncessary changes; fix the python unit test a6747cb [Prabeesh K] wait for starting the receiver before publishing data 87fc677 [Prabeesh K] address the comments: 97244ec [zsxwing] Make sbt build the assembly test jar for streaming mqtt 80474d1 [Prabeesh K] fix 1f0cfe9 [Prabeesh K] python style fix e1ee016 [Prabeesh K] scala style fix a5a8f9f [Prabeesh K] added Python test 9767d82 [Prabeesh K] implemented Python-friendly class a11968b [Prabeesh K] fixed python style 795ec27 [Prabeesh K] address comments ee387ae [Prabeesh K] Fix assembly jar location of mqtt-assembly 3f4df12 [Prabeesh K] updated version b34c3c1 [prabs] adress comments 3aa7fff [prabs] Added Python streaming mqtt word count example b7d42ff [prabs] Mqtt streaming support in Python
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Aug 20, 2015
This PR is based on apache#4229, thanks prabeesh. Closes apache#4229 Author: Prabeesh K <[email protected]> Author: zsxwing <[email protected]> Author: prabs <[email protected]> Author: Prabeesh K <[email protected]> Closes apache#7833 from zsxwing/pr4229 and squashes the following commits: 9570bec [zsxwing] Fix the variable name and check null in finally 4a9c79e [zsxwing] Fix pom.xml indentation abf5f18 [zsxwing] Merge branch 'master' into pr4229 935615c [zsxwing] Fix the flaky MQTT tests 47278c5 [zsxwing] Include the project class files 478f844 [zsxwing] Add unpack 5f8a1d4 [zsxwing] Make the maven build generate the test jar for Python MQTT tests 734db99 [zsxwing] Merge branch 'master' into pr4229 126608a [Prabeesh K] address the comments b90b709 [Prabeesh K] Merge pull request #1 from zsxwing/pr4229 d07f454 [zsxwing] Register StreamingListerner before starting StreamingContext; Revert unncessary changes; fix the python unit test a6747cb [Prabeesh K] wait for starting the receiver before publishing data 87fc677 [Prabeesh K] address the comments: 97244ec [zsxwing] Make sbt build the assembly test jar for streaming mqtt 80474d1 [Prabeesh K] fix 1f0cfe9 [Prabeesh K] python style fix e1ee016 [Prabeesh K] scala style fix a5a8f9f [Prabeesh K] added Python test 9767d82 [Prabeesh K] implemented Python-friendly class a11968b [Prabeesh K] fixed python style 795ec27 [Prabeesh K] address comments ee387ae [Prabeesh K] Fix assembly jar location of mqtt-assembly 3f4df12 [Prabeesh K] updated version b34c3c1 [prabs] adress comments 3aa7fff [prabs] Added Python streaming mqtt word count example b7d42ff [prabs] Mqtt streaming support in Python (cherry picked from commit 853809e) Signed-off-by: Tathagata Das <[email protected]>
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Aug 22, 2016
## What changes were proposed in this pull request? This patch introduces SQLQueryTestSuite, a basic framework for end-to-end SQL test cases defined in spark/sql/core/src/test/resources/sql-tests. This is a more standard way to test SQL queries end-to-end in different open source database systems, because it is more manageable to work with files. This is inspired by HiveCompatibilitySuite, but simplified for general Spark SQL tests. Once this is merged, I can work towards porting SQLQuerySuite over, and eventually also move the existing HiveCompatibilitySuite to use this framework. Unlike HiveCompatibilitySuite, SQLQueryTestSuite compares both the output schema and the output data (in string form). When there is a mismatch, the error message looks like the following: ``` [info] - blacklist.sql !!! IGNORED !!! [info] - number-format.sql *** FAILED *** (2 seconds, 405 milliseconds) [info] Expected "...147483648 -214748364[8]", but got "...147483648 -214748364[9]" Result should match for query #1 (SQLQueryTestSuite.scala:171) [info] org.scalatest.exceptions.TestFailedException: [info] at org.scalatest.Assertions$class.newAssertionFailedException(Assertions.scala:495) [info] at org.scalatest.FunSuite.newAssertionFailedException(FunSuite.scala:1555) [info] at org.scalatest.Assertions$class.assertResult(Assertions.scala:1171) ``` ## How was this patch tested? This is a test infrastructure change. Author: petermaxlee <[email protected]> Closes apache#14472 from petermaxlee/SPARK-16866.
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Okay, I think this makes all the test that were failing pass. I'm running all the tests now to make sure I didn't break anything else.