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@loosolab

Looso bioinformatics lab

Group of bioinformatics at the Max Planck Institute for Heart and Lung Research

Popular repositories Loading

  1. TOBIAS TOBIAS Public

    Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

    Python 188 40

  2. UROPA UROPA Public

    Universal RObust Peak Annotator

    Python 15 6

  3. scanpro scanpro Public

    Jupyter Notebook 12

  4. i2dash i2dash Public

    i2dash: interactive and iterative dashboards.

    R 10 3

  5. TF-COMB TF-COMB Public

    Transcription Factor Co-Occurrence using Market Basket analysis

    Python 10 1

  6. cardiac-progenitors cardiac-progenitors Public

    Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage settlement

    R 8 3

Repositories

Showing 10 of 25 repositories
  • FRED_whitelists Public
    loosolab/FRED_whitelists’s past year of commit activity
    Python 0 0 0 0 Updated Sep 20, 2024
  • Code_Li_et_al_2024_sEH_monocytes Public
    loosolab/Code_Li_et_al_2024_sEH_monocytes’s past year of commit activity
    R 0 MIT 0 0 0 Updated Aug 20, 2024
  • scanpro Public
    loosolab/scanpro’s past year of commit activity
    Jupyter Notebook 12 MIT 0 0 0 Updated Aug 1, 2024
  • TOBIAS Public

    Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

    loosolab/TOBIAS’s past year of commit activity
    Python 188 MIT 40 3 0 Updated Jul 15, 2024
  • SC-Framework Public
    loosolab/SC-Framework’s past year of commit activity
    Python 0 0 0 0 Updated Jun 19, 2024
  • biodaten23-24-scATAC-clustering Public
    loosolab/biodaten23-24-scATAC-clustering’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Feb 28, 2024
  • TF-COMB Public

    Transcription Factor Co-Occurrence using Market Basket analysis

    loosolab/TF-COMB’s past year of commit activity
    Python 10 MIT 1 14 0 Updated Jan 30, 2024
  • UROPA Public

    Universal RObust Peak Annotator

    loosolab/UROPA’s past year of commit activity
    Python 15 MIT 6 5 0 Updated Dec 19, 2023
  • TOBIAS_snakemake Public

    Snakemake pipeline for running TOBIAS analysis

    loosolab/TOBIAS_snakemake’s past year of commit activity
    Python 4 MIT 2 4 0 Updated Dec 15, 2023
  • FRED Public
    loosolab/FRED’s past year of commit activity
    Python 0 0 0 0 Updated Oct 27, 2023
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