buscopainter

Painting chromosomes using BUSCOs

Running the scripts

Assigning to chromosomes

buscopainter.py takes the full_table.tsv output file for two species, along with an optional prefix (specified with -p, default "buscopainter"), e.g.:

python3 buscopainter.py -r test_data/ilAglIoxx1_full_table.tsv -q test_data/ilApoTurb1_full_table.tsv

It will write two TSV files:

[PREFIX]_summary.tsv which contains a summary of the chromosomal assignments

[PREFIX]_location.tsv which contains locations of all shared BUSCOs. This file can be plotted using plot_locations.R

Plotting

The [PREFIX]_location.tsv can be plotted as follows:

Rscript --vanilla plot_locations.R buscopainter_location.tsv