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[Feat/macs3/memory consumption] To address the memory usage issue of hmmratac #640

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merged 19 commits into from
Apr 26, 2024
Merged

[Feat/macs3/memory consumption] To address the memory usage issue of hmmratac #640

merged 19 commits into from
Apr 26, 2024

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taoliu
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@taoliu taoliu commented Apr 26, 2024

Changes on hmmratac:

  1. Save the decoding results to a temporary file on disk, then load it back to identify accessible regions. This change will dramatically decrease memory usage and also make the computation faster. Feat: Reduction of memory consumption #628
  2. Fix a bug that we missed some peaks at the end of chromosomes.
  3. Output correct number of candidate regions to be decoded.

philippadoherty and others added 17 commits April 10, 2024 13:59
@taoliu taoliu merged commit 1d6c38e into master Apr 26, 2024
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@taoliu taoliu mentioned this pull request Apr 26, 2024
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@philippadoherty philippadoherty philippadoherty approved these changes

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@taoliu @philippadoherty