Update checkout action version #32
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| name: Linux verification | |
| on: [push, pull_request] | |
| jobs: | |
| # Documentation | |
| check-style-and-docstrings: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - name: Check white space (non-blocking) | |
| run: | | |
| ./.testing/trailer.py -e TEOS10 -l 120 src config_src 2>&1 | tee style_errors | |
| continue-on-error: true | |
| - name: Install packages used when generating documentation | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install python3-sphinx python3-lxml perl | |
| sudo apt-get install texlive-binaries texlive-base bibtool tex-common texlive-bibtex-extra | |
| sudo apt-get install graphviz | |
| - name: Build doxygen HTML | |
| run: | | |
| cd docs | |
| perl -e 'print "perl version $^V" . "\n"' | |
| mkdir _build && make nortd DOXYGEN_RELEASE=Release_1_8_13 UPDATEHTMLEQS=Y | |
| cat _build/doxygen_warn_nortd_log.txt | |
| - name: Report doxygen or style errors | |
| run: | | |
| grep "warning:" docs/_build/doxygen_warn_nortd_log.txt | grep -v "as part of a" | tee doxy_errors | |
| cat style_errors doxy_errors > all_errors | |
| cat all_errors | |
| test ! -s all_errors | |
| # Dependencies | |
| build-fms: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - uses: ./.github/actions/ubuntu-setup/ | |
| - name: Build libFMS.a | |
| run: make -C .testing build/deps/lib/libFMS.a -j | |
| - name: Upload libFMS.a and dependencies | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: fms-artifact | |
| path: | | |
| .testing/build/deps/include/ | |
| .testing/build/deps/lib/libFMS.a | |
| retention-days: 1 | |
| build-symmetric: | |
| runs-on: ubuntu-latest | |
| needs: build-fms | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup/ | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: fms-artifact | |
| path: .testing/build/deps/ | |
| - name: Compile MOM6 with symmetric indexing | |
| run: | | |
| make -C .testing build/symmetric/MOM6 -j -o build/deps/lib/libFMS.a | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/MOM6 | |
| retention-days: 1 | |
| build-asymmetric: | |
| runs-on: ubuntu-latest | |
| needs: build-fms | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup/ | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: fms-artifact | |
| path: .testing/build/deps/ | |
| - name: Compile MOM6 with asymmetric indexing | |
| run: | | |
| make -C .testing build/asymmetric/MOM6 -j -o build/deps/lib/libFMS.a | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: mom6-asymmetric-artifact | |
| path: .testing/build/asymmetric/MOM6 | |
| retention-days: 1 | |
| build-repro: | |
| runs-on: ubuntu-latest | |
| needs: build-fms | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup/ | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: fms-artifact | |
| path: .testing/build/deps/ | |
| - name: Compile repro | |
| run: make -C .testing build/repro/MOM6 -j -o build/deps/lib/libFMS.a | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: mom6-repro-artifact | |
| path: .testing/build/repro/MOM6 | |
| retention-days: 1 | |
| build-openmp: | |
| runs-on: ubuntu-latest | |
| needs: build-fms | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup/ | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: fms-artifact | |
| path: .testing/build/deps/ | |
| - name: Compile MOM6 supporting OpenMP | |
| run: make -C .testing build/openmp/MOM6 -j -o build/deps/lib/libFMS.a | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: mom6-openmp-artifact | |
| path: .testing/build/openmp/MOM6 | |
| retention-days: 1 | |
| build-coverage: | |
| runs-on: ubuntu-latest | |
| needs: build-fms | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup/ | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| name: fms-artifact | |
| path: .testing/build/deps/ | |
| - name: Compile MOM6 with code coverage | |
| run: make -C .testing build/cov/MOM6 -j -o build/deps/lib/libFMS.a | |
| - name: Compile MOM6 unit tests | |
| run: | | |
| make -C .testing build/unit/test_MOM_file_parser -o build/deps/lib/libFMS.a | |
| make -C .testing build.unit -o build/deps/lib/libFMS.a | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: mom6-coverage-artifact | |
| path: | | |
| .testing/build/cov/MOM6 | |
| .testing/build/cov/*.gcno | |
| .testing/build/unit/test_MOM_EOS | |
| .testing/build/unit/test_MOM_file_parser | |
| .testing/build/unit/test_MOM_mixedlayer_restrat | |
| .testing/build/unit/test_MOM_string_functions | |
| .testing/build/unit/*.gcno | |
| retention-days: 1 | |
| #--- | |
| test-grid: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-symmetric | |
| - build-asymmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download symmetric MOM6 | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Download asymmetric MOM6 | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-asymmetric-artifact | |
| path: .testing/build/asymmetric/ | |
| - name: Verify symmetric-asymmetric grid invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| chmod u+rx .testing/build/asymmetric/MOM6 | |
| make -C .testing test.grid -o build/symmetric/MOM6 -o build/asymmetric/MOM6 | |
| test-layout: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify processor domain layout | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.layout -o build/symmetric/MOM6 | |
| test-rotate: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify rotational invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.rotate -o build/symmetric/MOM6 | |
| test-restart: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify restart invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.restart -o build/symmetric/MOM6 | |
| # Does this do anything anymore? I read MALLOC_PERTURB_ was removed from libc | |
| test-nan: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify aggressive initialization | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.nan -o build/symmetric/MOM6 | |
| test-dim-t: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify time dimensional invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.dim.t -o build/symmetric/MOM6 | |
| test-dim-l: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify horizontal length dimensional invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.dim.l -o build/symmetric/MOM6 | |
| test-dim-h: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify vertical thickness dimensional invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.dim.h -o build/symmetric/MOM6 | |
| test-dim-z: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify vertical coordinate dimensional invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.dim.z -o build/symmetric/MOM6 | |
| test-dim-q: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify heat dimensional invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.dim.z -o build/symmetric/MOM6 | |
| test-dim-r: | |
| runs-on: ubuntu-latest | |
| needs: build-symmetric | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download Artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Verify density dimensional invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| make -C .testing test.dim.r -o build/symmetric/MOM6 | |
| test-openmp: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-symmetric | |
| - build-openmp | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download symmetric MOM6 | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Download OpenMP MOM6 | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-openmp-artifact | |
| path: .testing/build/openmp/ | |
| - name: Verify OpenMP invariance | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| chmod u+rx .testing/build/openmp/MOM6 | |
| make -C .testing test.openmp -o build/symmetric/MOM6 -o build/openmp/MOM6 | |
| test-repro: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - build-symmetric | |
| - build-repro | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download DEBUG MOM6 | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-symmetric-artifact | |
| path: .testing/build/symmetric/ | |
| - name: Download REPRO MOM6 | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-repro-artifact | |
| path: .testing/build/repro/ | |
| - name: Verify optimized equivalence | |
| run: | | |
| chmod u+rx .testing/build/symmetric/MOM6 | |
| chmod u+rx .testing/build/repro/MOM6 | |
| make -C .testing test.repro -o build/symmetric/MOM6 -o build/repro/MOM6 | |
| run-coverage: | |
| runs-on: ubuntu-latest | |
| needs: build-coverage | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: ./.github/actions/ubuntu-setup | |
| - name: Download unit coverage tests | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: mom6-coverage-artifact | |
| path: .testing/build/ | |
| - name: Generate MOM6 coverage | |
| run: | | |
| chmod u+rx .testing/build/cov/MOM6 | |
| chmod u+rx .testing/build/unit/test_MOM_{EOS,file_parser,mixedlayer_restrat,string_functions} | |
| make -C .testing -j run.cov -o build/cov/MOM6 | |
| # TODO: Need to generate this list of executables (or just not use them) | |
| - name: Generate unit test coverage | |
| run: | | |
| make -C .testing -j run.cov.unit -o build/unit/test_MOM_file_parser | |
| make -C .testing -j run.unit -o build/unit/test_MOM_EOS -o build/unit/test_MOM_file_parser -o build/unit/test_MOM_mixedlayer_restrat -o build/unit/test_MOM_string_functions | |
| # Split these into a separate job? | |
| #- name: Report coverage to CI (PR) | |
| # if: github.event_name == 'pull_request' | |
| # run: make -C .testing report.cov REQUIRE_COVERAGE_UPLOAD=true | |
| # env: | |
| # CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| #- name: Report coverage to CI (Push) | |
| # if: github.event_name != 'pull_request' | |
| # run: make -C .testing report.cov | |
| # env: | |
| # CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| cleanup: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - test-grid | |
| - test-layout | |
| - test-rotate | |
| - test-restart | |
| - test-nan | |
| - test-dim-t | |
| - test-dim-l | |
| - test-dim-h | |
| - test-dim-z | |
| - test-dim-q | |
| - test-dim-r | |
| - test-openmp | |
| - test-repro | |
| - run-coverage | |
| steps: | |
| - uses: geekyeggo/delete-artifact@v4 | |
| with: | |
| name: | | |
| fms-artifact | |
| mom6-*-artifact |