Trop-E R Markdown

Slides and materials for 2019-08-09 Trop-E seminar at XTBG.

View the accompanying slides here.

We learned:

• what R Markdown is
• why we want to use R Markdown

Resources

Markdown/R Markdown basics

• Markdown Cheatsheet

• Rmarkdown-cheatsheet-2.0.pdf

• R Markdown: The Definitive Guide

• Introduction to R Markdown

• RMarkdown Tips and Tricks An Introduction to RMarkdown

Git version control

• Github version control

• Blischak JD, Davenport ER, Wilson G (2016) A Quick Introduction to Version Control with Git and GitHub. PLoS Comput Biol 12(1): e1004668. https://doi.org/10.1371/journal.pcbi.1004668

Writing papers with R Markdown

• The Plain Person’s Guide to Plain Text Social Science

• How to create professional reports from R scripts, with custom styles

• Reproducible Reporting with RMarkdown

• Reproducible workflow, Metadata, and R Markdown

• Writing Technical Papers with Markdown

• Writing your thesis with R Markdown (1) – Getting started

Git repos

• xaringan: an R package for creating slideshows

• Collapsible Code Output for xaringan

• R Markdown template for scienfitic papers