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different dimension reduction techniques for single cell applied on pbmck3

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mehakrafiq/scRNA_DimensionReduction_pbmck3

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Important Instructions

Different notebooks need different enviornments, using a single one caused conflicts

  • all R packages glmpca, simlr & scry used singlecell
  • Deep Learning autoencoders used - scVAE env
  • Zifa & ICA used simple singlecell env
  • scvis needs its own env so used scvi-env

Note Tried using separate env for scphere adn grandprix but tensorflow incomaptibility issues , even with older version of gpflow the library would't run Using apple gpus

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different dimension reduction techniques for single cell applied on pbmck3

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