Merge pull request #224 from mims-harvard/avelez-dev #20

	# Docs for the Azure Web Apps Deploy action: https://github.com/Azure/webapps-deploy
	# More GitHub Actions for Azure: https://github.com/Azure/actions
	# More info on Python, GitHub Actions, and Azure App Service: https://aka.ms/python-webapps-actions

	name: Build Conda Environment And Run Python Tests

	on:
	push:
	branches:
	- main
	- avelez-dev
	workflow_dispatch:

	jobs:
	build:
	runs-on: ubuntu-latest

	defaults:
	run:
	shell: bash -l {0}

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python version
	uses: actions/setup-python@v1
	with:
	python-version: '3.9'

	- name: Setup Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	miniconda-version: "latest"
	channels: bioconda, conda-forge, defaults
	use-only-tar-bz2: true
	auto-update-conda: true
	auto-activate-base: true

	- name: Create and start Conda environment. Run tests. Run YAPF
	run: \|
	echo "Creating Conda Environment from environment.yml"
	conda env create -f environment.yml
	conda activate tdc-conda-env
	python run_tests.py
	yapf --style=google -r -d tdc
	conda deactivate

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