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WIP: enable multiple hyperparameter groups and improve mp performance #139

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merged 176 commits into from
Feb 27, 2020

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@nw13slx nw13slx commented Feb 12, 2020

  • this branch enables multi hyperparameters and allows partial optimization
    • with a new mc_sephyps kernel
    • multihyps flag and hyps_mask members in GP class
  • reduce memory consumption and improve mp performance by
    • reduce data passing through mp while computing the covariance matrix
    • avoid nesting of threads

jonpvandermause and others added 30 commits September 21, 2019 09:14
…n/hyper-parameters_merge

Conflicts:
	flare/gp.py
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codecov-io commented Feb 12, 2020

Codecov Report

Merging #139 into master will decrease coverage by 2.29%.
The diff coverage is 46.34%.

Impacted file tree graph

@@            Coverage Diff            @@
##           master     #139     +/-   ##
=========================================
- Coverage   58.36%   56.06%   -2.3%     
=========================================
  Files          31       35      +4     
  Lines        4813     5797    +984     
=========================================
+ Hits         2809     3250    +441     
- Misses       2004     2547    +543
Impacted Files Coverage Δ
flare/kernels/kernels.py 21.62% <ø> (ø)
flare/mc_simple.py 100% <100%> (+78.28%) ⬆️
flare/kernels/__init__.py 100% <100%> (ø)
flare/kernels/mc_sephyps.py 21.49% <21.49%> (ø)
flare/kernels/mc_simple.py 21.71% <21.71%> (ø)
flare/dft_interface/vasp_util.py 95.34% <33.33%> (ø) ⬆️
flare/mgp/utils.py 21.53% <33.33%> (-0.38%) ⬇️
flare/dft_interface/__init__.py 75% <50%> (ø) ⬆️
flare/kernels/utils.py 58.82% <58.82%> (ø)
flare/gp.py 79.8% <72.15%> (-9.65%) ⬇️
... and 11 more

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@YuuuXie YuuuXie merged commit d431ab8 into master Feb 27, 2020
@nw13slx nw13slx deleted the features/shp/hyper_parameters_merge branch April 17, 2020 13:55
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6 participants