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Merge pull request #2522 from mashehu/reduce-ci-matrix-on-dev #348

Merge pull request #2522 from mashehu/reduce-ci-matrix-on-dev

Merge pull request #2522 from mashehu/reduce-ci-matrix-on-dev #348

name: Create a pipeline and test it
on:
push:
branches:
- dev
pull_request:
release:
types: [published]
# Cancel if a newer run is started
concurrency:
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true
env:
NXF_ANSI_LOG: false
jobs:
RunTestWorkflow:
runs-on: ubuntu-latest
env:
NXF_ANSI_LOG: false
strategy:
matrix:
NXF_VER:
- "23.04.0"
- "latest-everything"
steps:
- uses: actions/checkout@v3
name: Check out source-code repository
- name: Set up Python 3.12
uses: actions/setup-python@v4
with:
python-version: 3.12
- name: Install python dependencies
run: |
python -m pip install --upgrade pip
pip install .
- name: Install Nextflow
uses: nf-core/setup-nextflow@v1
with:
version: ${{ matrix.NXF_VER }}
- name: Run nf-core/tools
run: |
nf-core --log-file log.txt create -n testpipeline -d "This pipeline is for testing" -a "Testing McTestface" --plain
nextflow run nf-core-testpipeline -profile test,docker --outdir ./results
- name: Upload log file artifact
if: ${{ always() }}
uses: actions/upload-artifact@v3
with:
name: nf-core-log-file
path: log.txt