Add support for pymongo 4 (#340) #1000
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run tests | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - master | |
| concurrency: | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install dependencies | |
| run: | | |
| cp tests/data/matador_pipelines_conf.yml $HOME/.matadorrc | |
| python -m pip install --upgrade setuptools | |
| pip install -r requirements/dev_requirements.txt | |
| - name: Check for syntax errors and lint with flake8 | |
| run: | | |
| pip install flake8 | |
| flake8 . \ | |
| --count --select=E9,F63,F7,F82 --show-source --statistics | |
| flake8 . \ | |
| --count \ | |
| --statistics | |
| - name: Run pre-commit | |
| run: | | |
| pre-commit run --all-files || ( git status --short; git diff; exit 1 ) | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 4 | |
| matrix: | |
| python-version: [3.9, "3.10"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| cp tests/data/matador_pipelines_conf.yml $HOME/.matadorrc | |
| python -m pip install --upgrade setuptools pip wheel | |
| pip install -e .[test,optional] | |
| - name: Test with pytest | |
| run: | | |
| py.test -rs --cov-config .coveragerc --cov=./matador/ --cov-report=xml | |
| # - name: Test notebook examples | |
| # if: matrix.python-version == 3.8 && github.repository == 'ml-evs/matador' | |
| # run: | | |
| # py.test -rs -vvv --nbval --current-env --cov-config .coveragerc --cov=./matador/ --cov-append --cov-report=xml examples/interactive/magres_plotting/ | |
| # py.test -rs -vvv --nbval --current-env --cov-config .coveragerc --cov=./matador/ --cov-append --cov-report=xml examples/interactive/voltage/ | |
| # py.test -rs -vvv --nbval-lax --current-env --cov-config .coveragerc --cov=./matador/ --cov-append --cov-report=xml examples/interactive/pymatgen_and_ase_interfaces/ | |
| # py.test -rs -vvv --nbval-lax --current-env --cov-config .coveragerc --cov=./matador/ --cov-append --cov-report=xml examples/interactive/plot_styles/ | |
| - name: Upload coverage to Codecov | |
| if: matrix.python-version == 3.8 && github.repository == 'ml-evs/matador' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| file: ./coverage.xml | |
| flags: unittests |