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## Summary of Changes
Updated the TR grading code to stop double counting automated
extractions which lead to an incorrect amount of true positives.
## Expanded explanation
There is a many to one relationship between SKEMA extractions and manual
annotations. Multiple extractions can match an annotation (be correct).
To compute P, R and F1, all the extractions associated to a manual
annotation should be counted as a single true positive.
This change addresses this issue.
### Related issues
Resolves 755 e017c99
Recall is being computed incorrectly and sometimes it exceeds
1.0
.Example:
Attached are the files used to compute these numbers
expected_cosmos_ground_truth.json
extractions.json
annotations.json
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