Turn off infer_residues for visualize step (#1129)

* turn off infer_residues for visualize step * fix typo * update importlib_resources
mosdef-hub · Jun 29, 2023 · 0f7c070 · 0f7c070
1 parent 474b65f
commit 0f7c070
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diff --git a/mbuild/compound.py b/mbuild/compound.py
@@ -1901,6 +1901,7 @@ def _visualize_py3dmol(self, show_ports=False, color_scheme={}):
             os.path.join(tmp_dir, "tmp.mol2"),
             show_ports=show_ports,
             overwrite=True,
+            parmed_kwargs={"infer_residues": False},
         )
 
         view = py3Dmol.view()

diff --git a/mbuild/utils/io.py b/mbuild/utils/io.py
@@ -19,14 +19,15 @@
 ##############################################################################
 """
 import importlib
-import importlib.resources as resources
 import inspect
 import os
 import sys
 import textwrap
 import warnings
 from unittest import SkipTest
 
+import importlib_resources as resources
+
 
 class DelayImportError(ImportError, SkipTest):
     """Error to allow better import handling."""