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Refactored updateLigerObject(); minor fix in violin plots #127

Refactored updateLigerObject(); minor fix in violin plots

Refactored updateLigerObject(); minor fix in violin plots #127

Triggered via push July 26, 2024 17:38
Status Success
Total duration 2h 39m 39s
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r.yml

on: push
Matrix: build
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1 error and 15 warnings
macOS-latest (release)
No such keg: /opt/homebrew/Cellar/r
macOS-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, codecov/codecov-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
macOS-latest (release)
pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config
macOS-latest (release)
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated dependents or dependents with broken linkage!
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/macosx/big-sur-arm64/contrib/4.4:
ubuntu-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, codecov/codecov-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (release)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, codecov/codecov-action@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
windows-latest (release)
unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4: