Add NEWS.md

mvfki · Oct 19, 2023 · e1d81a7 · e1d81a7
1 parent a0bd940
commit e1d81a7
Showing 1 changed file with 18 additions and 0 deletions.
diff --git a/NEWS.md b/NEWS.md
@@ -0,0 +1,18 @@
+## Next release (rliger 1.9.9)
+
+### Added
+
+- `ligerDataset` class for per-dataset information storage, with inheritance for specific modalities
+- A number of plotting functions with clear function names and useful functionality
+- Leiden clustering method, now as default rather than Louvain
+- Pseudo-bulk DEG method
+- Gene name pattern for expression percentage QC metric
+- Native Seurat object support for the core integration workflow
+- A documentation website built with pkgdown
+
+### Changed
+
+- `liger` object class structure
+- iNMF (previously `optimizeALS()`), UINMF (previously `optimizeALS(unshared = TRUE)`) and online iNMF (previously `online_iNMF()`) implementation with vastly improved performance.
+Now named by `runINMF()`, `runUINMF()` and `runOnlineINMF()` respectively, and wrapped in 
+`runIntegration()`.