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BaseQueryTest.php: The method reOrderNestedPosts uses an else expression. Else clauses are basically not necessary and you can simplify the code by not using them. (ElseExpression, Clean Code Rules)
BaseQuery.php: The class BaseQuery has a coupling between objects value of 15. Consider to reduce the number of dependencies under 13. (CouplingBetweenObjects, Design Rules)
IndexQuery.php: The method query() has a Cyclomatic Complexity of 13. The configured cyclomatic complexity threshold is 10. (CyclomaticComplexity, Code Size Rules)
IndexQuery.php: The method query() has an NPath complexity of 400. The configured NPath complexity threshold is 200. (NPathComplexity, Code Size Rules)
SearchQuery.php: The method applyQueryParamsOnQuery() has a Cyclomatic Complexity of 12. The configured cyclomatic complexity threshold is 10. (CyclomaticComplexity, Code Size Rules)
BaseQueryTest.php: The method reOrderNestedPostsDataProvider() has 168 lines of code. Current threshold is set to 100. Avoid really long methods. (ExcessiveMethodLength, Code Size Rules)