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Comparing between methylation patterns of different samples
question
Looking for clarification on inputs and/or outputs
#277
opened Oct 9, 2024 by
Raya-Faigenbaum-Romm
m6A methylation analysis and explanation of output files
question
Looking for clarification on inputs and/or outputs
#276
opened Oct 8, 2024 by
JhinJhinJhin
uncertain strand direction in the pileup bed file
question
Looking for clarification on inputs and/or outputs
#274
opened Oct 2, 2024 by
SimonChen1997
Request: additional output columns for extract
enhancement
New feature or request
#270
opened Sep 28, 2024 by
OberonDixon
Difference in total counts of each probability per modification in different pore chemistries
question
Looking for clarification on inputs and/or outputs
#269
opened Sep 26, 2024 by
eesiribloom
adjust-mods for skipped reads
question
Looking for clarification on inputs and/or outputs
#268
opened Sep 25, 2024 by
ekushele
Strange bias between percent_modified and valid_coverage from modkit pileup
question
Looking for clarification on inputs and/or outputs
#262
opened Sep 13, 2024 by
flofloflo-cell
Normalized the DMR scores
question
Looking for clarification on inputs and/or outputs
#261
opened Sep 13, 2024 by
Congnguyenn
how to interpret 5mC and 5hmC call for same position in the genome
question
Looking for clarification on inputs and/or outputs
#258
opened Sep 9, 2024 by
dasn588
Using a negative control sample to inform thresholds?
question
Looking for clarification on inputs and/or outputs
#257
opened Sep 6, 2024 by
hackkr
modkit pileup - modified based code = 17802
question
Looking for clarification on inputs and/or outputs
#256
opened Sep 4, 2024 by
reJELIN
Setting appropriate thresholds for calling m6A and pseU using modkit pileup - What to make of high Nfail numbers?
question
Looking for clarification on inputs and/or outputs
#255
opened Sep 2, 2024 by
DepledgeLab
--call-mods not working on m6a
question
Looking for clarification on inputs and/or outputs
#252
opened Aug 28, 2024 by
faulk-lab
How does modkit extract handle indels on reads?
enhancement
New feature or request
question
Looking for clarification on inputs and/or outputs
#249
opened Aug 21, 2024 by
Fu-Yilei
modkit extract m6A tsv problems
enhancement
New feature or request
#246
opened Aug 9, 2024 by
kir1to455
thread 'main' panicked, "index out of bounds: the len is 10 but the index is 10"
build-available
custom build produced for fix.
troubleshooting
workflow and data preparation questions
#244
opened Aug 7, 2024 by
lucy924
Differential methylation scoring
DMR
modkit dmr
question
Looking for clarification on inputs and/or outputs
#243
opened Aug 5, 2024 by
setshabaTaukobong
Number of reads processed by modkit
question
Looking for clarification on inputs and/or outputs
#241
opened Jul 30, 2024 by
ZhihanNUS
Ignore multiple mods in adjust-mods
enhancement
New feature or request
#237
opened Jul 22, 2024 by
Ge0rges
Support for generic MM tags?
enhancement
New feature or request
#235
opened Jul 19, 2024 by
ADHDrian
modkit results look off for CHG and CHH contexts - plant methylation
troubleshooting
workflow and data preparation questions
#234
opened Jul 19, 2024 by
colindaven
Parsing input error
logging
Additional information should be logged
troubleshooting
workflow and data preparation questions
#231
opened Jul 15, 2024 by
Ge0rges
Version mismatch
troubleshooting
workflow and data preparation questions
#226
opened Jul 7, 2024 by
rugilemat
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