Minor typo fixes from last release.

nanoporetech · Mar 13, 2018 · c60b5b6 · c60b5b6
1 parent 9ff653d
commit c60b5b6
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/tombo/tests/shell_tests.sh b/tombo/tests/shell_tests.sh
@@ -97,7 +97,7 @@ tombo event_resquiggle \
 
 printf "\n\n********* Testing minimap2 index **********\n"
 tombo resquiggle \
-      $natDir $mmiFn \
+      $natDir $genomeFn --minimap2-index $mmiFn \
       --corrected-group RawMinimapIndexCorrected \
       --processes 4 --overwrite \
       --failed-reads-filename testing.native.failed_read.txt

diff --git a/tombo/tombo_stats.py b/tombo/tombo_stats.py
@@ -1515,11 +1515,11 @@ def get_region_per_read_stats(self, interval_data, num_reads=None):
             block_read_id_lookup = dict([
                 (read_id_val, read_id) for read_id, read_id_val in
                 self.per_read_blocks[block_data[2]][
-                    'block_stats/read_ids'].attrs.items()])
+                    'read_ids'].attrs.items()])
             reg_read_ids = [
                 block_read_id_lookup[r_id] for r_id in block_stats['read_id']]
-            int_block_stats.appen(np.array(
-                list(zip(reg_poss, reg_read_stats, conv_reg_ids)),
+            int_block_stats.append(np.array(
+                list(zip(reg_poss, reg_read_stats, reg_read_ids)),
                 dtype=[(str('pos'), 'u4'), (str('stat'), 'f8'),
                        (str('read_id'), object)]))