CI #1029

	name: CI
	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- main
	schedule:
	- cron: "0 0 * * *" # Daily “At 00:00”
	workflow_dispatch: # allows you to trigger manually

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	build:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.9"]
	repo-type:
	- conda
	- dockerfile
	steps:
	- uses: actions/checkout@v2
	- name: Create conda environment
	uses: mamba-org/provision-with-micromamba@main
	with:
	cache-downloads: true
	micromamba-version: "latest"
	environment-file: ci/environment.yml
	extra-specs: \|
	python=${{ matrix.python-version }}

	- name: Install repo2apptainer
	run: \|
	python -m pip install -e . --no-deps --force-reinstall
	conda list

	- name: Run tests
	run: \|
	cd tests
	repo2apptainer build ${{ matrix.repo-type }}
	docker run --privileged --rm -v ~/.singularity/cache/:/work kaczmarj/apptainer:1.0.0 exec r2s-${{ matrix.repo-type }}-main.sif conda --version

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