Canon enhanced ((rordenlab/dcm2niix#491) Philips _fieldmaphz (rordenl…

…ab/dcm2niix#455)
neurolabusc · Mar 10, 2021 · d891a4b · d891a4b
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Showing 15 changed files with 66 additions and 11 deletions.
diff --git a/In/Canon/DTI_PA.dcm b/In/Canon/DTI_PA.dcm
diff --git a/README.md b/README.md
@@ -9,13 +9,19 @@ dcm_qa_enh is a simple DICOM to NIfTI validator script and dataset to test conve
   * source: [Jeffrey Luci, The University of Texas at Austin](https://github.com/rordenlab/dcm2niix/issues/240)
   * note: [XA11 multi-band sequences can inaccurately report single-band values in 0021,1104](https://github.com/rordenlab/dcm2niix/issues/303)
   * note: see [Siemens](https://github.com/rordenlab/dcm2niix/tree/master/Siemens) page.
-  * version: (0018,1020) LO [syngo MR XA10]
+  * version: (0018,1020) syngo MR XA10
 
 * Philips/
   * source: [Baxter Rogers, Vanderbilt University](https://github.com/rordenlab/dcm2niix/issues/363)
   * additional examples: [NITRC](https://www.nitrc.org/plugins/mwiki/index.php/dcm2nii:MainPage)
   * model: (0008,1090) Achieva dStream
-  * version: (0018,1020) LO [5.3.0\5.3.0.3]
+  * version: (0018,1020) 5.3.0\5.3.0.3
+
+ * Canon/
+   * source: [Clément Debacker at Le Groupe Hospitalier Universitaire Paris](https://github.com/neurolabusc/dcm_qa_canon_enh)
+   * additional examples: [dcm_qa_canon_enh](https://github.com/neurolabusc/dcm_qa_canon_enh)
+   * model: (0008,1090) Galan 3T
+   * version: (0018,1020) V6.0SP2000*
 
 ## Links
 

diff --git a/Ref/Canon_DTI_PA-ortho_9000.bval b/Ref/Canon_DTI_PA-ortho_9000.bval
@@ -0,0 +1 @@
+0 1500 1500 1500 1500 1500 1500 1500 1500 1500 1500 1500 1500
diff --git a/Ref/Canon_DTI_PA-ortho_9000.bvec b/Ref/Canon_DTI_PA-ortho_9000.bvec
@@ -0,0 +1,3 @@
+0 0 0.44522 0.895421 0.44522 0.895421 0 0 -0.44522 0.895421 -0.44522 0.895421 0
+0 0.895421 0 0.44522 0.895421 0 0.44522 0.895421 0 -0.44522 0.895421 0 -0.44522
+0 0.44522 0.895421 0 0 0.44522 0.895421 -0.44522 0.895421 0 0 -0.44522 0.895421
diff --git a/Ref/Canon_DTI_PA-ortho_9000.json b/Ref/Canon_DTI_PA-ortho_9000.json
@@ -0,0 +1,41 @@
+{
+	"Modality": "MR",
+	"MagneticFieldStrength": 3,
+	"ImagingFrequency": 123.208,
+	"Manufacturer": "Canon",
+	"ManufacturersModelName": "Galan 3T",
+	"DeviceSerialNumber": "9143",
+	"BodyPartExamined": "HEAD",
+	"PatientPosition": "HFS",
+	"SoftwareVersions": "V6.0SP2000*",
+	"MRAcquisitionType": "2D",
+	"SeriesDescription": "DTI_PA-ortho",
+	"ProtocolName": "DTI_PA-ortho",
+	"ImageType": ["ORIGINAL", "PRIMARY", "GDC", "NONE"],
+	"SeriesNumber": 9000,
+	"AcquisitionTime": "10:22:54.000000",
+	"AcquisitionNumber": 1,
+	"SliceThickness": 3,
+	"EchoTime": 0.079,
+	"RepetitionTime": 10,
+	"FlipAngle": 90,
+	"CoilString": "32ch Head SPDR",
+	"PercentPhaseFOV": 100,
+	"PercentSampling": 100,
+	"EchoTrainLength": 30,
+	"AcquisitionMatrixPE": 80,
+	"ReconMatrixPE": 80,
+	"ParallelReductionFactorInPlane": 2,
+	"PixelBandwidth": 1562.5,
+	"PhaseEncodingAxis": "j",
+	"ImageOrientationPatientDICOM": [
+		1,
+		0,
+		0,
+		0,
+		1,
+		0	],
+	"InPlanePhaseEncodingDirectionDICOM": "COL",
+	"ConversionSoftware": "dcm2niix",
+	"ConversionSoftwareVersion": "v1.0.20210308"
+}
diff --git a/Ref/Canon_DTI_PA-ortho_9000.nii b/Ref/Canon_DTI_PA-ortho_9000.nii
diff --git a/Ref/Philips_WIP_AnatBrain_T1W3D_301.json b/Ref/Philips_WIP_AnatBrain_T1W3D_301.json
@@ -55,5 +55,5 @@
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "ROW",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20201030"
+	"ConversionSoftwareVersion": "v1.0.20210308"
 }
diff --git a/Ref/Philips_WIP_AnatBrain_T1W3D_301_ph.json b/Ref/Philips_WIP_AnatBrain_T1W3D_301_ph.json
@@ -55,5 +55,5 @@
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "ROW",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20201030"
+	"ConversionSoftwareVersion": "v1.0.20210308"
 }
diff --git a/Ref/Philips_WIP_B0_NS_801_e1.json b/Ref/Philips_WIP_B0_NS_801_e1.json
@@ -18,7 +18,7 @@
 	"ScanningSequence": "RM",
 	"SequenceVariant": "SS",
 	"ScanOptions": "OTHER",
-	"ImageType": ["ORIGINAL", "PRIMARY", "T1", "MIXED"],
+	"ImageType": ["ORIGINAL", "PRIMARY", "T1", "MIXED", "FIELDMAPHZ"],
 	"SeriesNumber": 801,
 	"AcquisitionTime": "15:25:9.020000",
 	"AcquisitionNumber": 8,
@@ -53,5 +53,5 @@
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "ROW",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20201030"
+	"ConversionSoftwareVersion": "v1.0.20210308"
 }
diff --git a/Ref/Philips_WIP_B0_NS_801_e2_real.json → Ref/Philips_WIP_B0_NS_801_e2_fieldmaphz.json b/Ref/Philips_WIP_B0_NS_801_e2_real.json → Ref/Philips_WIP_B0_NS_801_e2_fieldmaphz.json
@@ -18,7 +18,7 @@
 	"ScanningSequence": "RM",
 	"SequenceVariant": "SS",
 	"ScanOptions": "OTHER",
-	"ImageType": ["ORIGINAL", "PRIMARY", "T1", "MIXED", "REAL"],
+	"ImageType": ["ORIGINAL", "PRIMARY", "T1", "MIXED", "REAL", "FIELDMAPHZ"],
 	"SeriesNumber": 801,
 	"AcquisitionTime": "15:25:9.020000",
 	"AcquisitionNumber": 8,
@@ -52,5 +52,5 @@
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "ROW",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20201030"
+	"ConversionSoftwareVersion": "v1.0.20210308"
 }
diff --git a/Ref/Philips_WIP_B0_NS_801_e2_real.nii → Ref/Philips_WIP_B0_NS_801_e2_fieldmaphz.nii b/Ref/Philips_WIP_B0_NS_801_e2_real.nii → Ref/Philips_WIP_B0_NS_801_e2_fieldmaphz.nii
diff --git a/Ref/Philips_WIP_resting_state_1001_e1.json b/Ref/Philips_WIP_resting_state_1001_e1.json
@@ -54,5 +54,5 @@
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "COL",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20201030"
+	"ConversionSoftwareVersion": "v1.0.20210308"
 }
diff --git a/Ref/Philips_WIP_resting_state_1001_e2.json b/Ref/Philips_WIP_resting_state_1001_e2.json
@@ -22,6 +22,10 @@
 	"SeriesNumber": 1001,
 	"AcquisitionTime": "15:28:54.510000",
 	"AcquisitionNumber": 10,
+	"PhilipsRescaleSlope": 0.769475,
+	"PhilipsRescaleIntercept": 0,
+	"PhilipsScaleSlope": 0.00363177,
+	"UsePhilipsFloatNotDisplayScaling": 1,
 	"SliceThickness": 4,
 	"SpacingBetweenSlices": 4,
 	"EchoNumber": 2,
@@ -50,5 +54,5 @@
 		0	],
 	"InPlanePhaseEncodingDirectionDICOM": "COL",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20201030"
+	"ConversionSoftwareVersion": "v1.0.20210308"
 }
diff --git a/Ref/Philips_WIP_resting_state_1001_e2.nii b/Ref/Philips_WIP_resting_state_1001_e2.nii
diff --git a/Ref/Siemens_REST1_w_SMS_PF7-8_6.json b/Ref/Siemens_REST1_w_SMS_PF7-8_6.json
@@ -56,5 +56,5 @@
 		1e-06	],
 	"InPlanePhaseEncodingDirectionDICOM": "COL",
 	"ConversionSoftware": "dcm2niix",
-	"ConversionSoftwareVersion": "v1.0.20201030"
+	"ConversionSoftwareVersion": "v1.0.20210308"
 }