On mac nextclade dataset list --name=sars-cov-2 throws error [ERROR] Nextclade: invalid format string

[corneliusroemer]

I'm using nextclade v1.4.1 installed from bioconda on macOS 11.6.

When I run the command provided in the docs: nextclade dataset list --name=sars-cov-2 I get the following error: [ERROR] Nextclade: invalid format string

Is this an issue with Nextclade in general, with the macOS binary, or with the bioconda build?

[ivan-aksamentov]

What is bioconda build? I am not aware how it ended up there.

Does it also happen with the official binaries and/or local build from release branch?

But that's definitely a bug somewhere. This is a fatal error and the message is not something we are emitting. It comes from some dependency.

[ivan-aksamentov]

The bioconda package is something Peter maintains probably. I assume it's this one?
https://anaconda.org/bioconda/nextclade

[corneliusroemer]

Correct, that's the bioconda build. I would assume @pvanheus uses the binaries as is. I will try with release downloaded from Github, so you don't complain about me using a non-official download channel 😛

[corneliusroemer]

OK I tested with out binary, it still pops up. So this seems to be a bug with nextclade dataset list on macOS. nextclade dataset get works, though. Which is why no one may have noticed so far.

[ivan-aksamentov]

Oh no! What could have happened there... Seems to be working on Linux.