Release 2.12.0 #894
GitHub Actions / JUnit Test Report
failed
Nov 15, 2024 in 0s
1 tests run, 0 passed, 0 skipped, 1 failed.
Annotations
Check failure on line 1 in Sintax
github-actions / JUnit Test Report
Sintax
Assertion failed:
21 of 41 assertions failed
Raw output
Nextflow stdout:
ERROR ~ Error executing process > 'NFCORE_AMPLISEQ:AMPLISEQ:FILTER_STATS'
Caused by:
Process `NFCORE_AMPLISEQ:AMPLISEQ:FILTER_STATS` terminated with an error exit status (125)
Command executed:
filter_stats.py ASV_table.tsv filtered-table.tsv
cat <<-END_VERSIONS > versions.yml
"NFCORE_AMPLISEQ:AMPLISEQ:FILTER_STATS":
python: $(python --version 2>&1 | sed 's/Python //g')
pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)")
END_VERSIONS
Command exit status:
125
Command output:
(empty)
Command error:
Unable to find image 'quay.io/biocontainers/pandas:1.1.5' locally
docker: Error response from daemon: received unexpected HTTP status: 504 Gateway Time-out.
See 'docker run --help'.
Work dir:
/home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/work/ac/26283410bc1dc664cbb78a453337f2
Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line
-- Check '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/meta/nextflow.log' file for details
ERROR ~ Unexpected error [NullPointerException]
-- Check script './subworkflows/local/utils_nfcore_ampliseq_pipeline/../../nf-core/utils_nfcore_pipeline/main.nf' at line: 97 or see '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/meta/nextflow.log' file for more details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
-- Check '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting
-- Check '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/meta/nextflow.log' file for details
Nextflow stderr:
Nextflow 24.10.0 is available - Please consider updating your version to it
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