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Release 2.12.0

Release 2.12.0 #894

GitHub Actions / JUnit Test Report failed Nov 15, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

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Check failure on line 1 in Sintax

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@github-actions github-actions / JUnit Test Report

Sintax

Assertion failed: 

21 of 41 assertions failed
Raw output
Nextflow stdout:

ERROR ~ Error executing process > 'NFCORE_AMPLISEQ:AMPLISEQ:FILTER_STATS'

Caused by:
  Process `NFCORE_AMPLISEQ:AMPLISEQ:FILTER_STATS` terminated with an error exit status (125)


Command executed:

  filter_stats.py ASV_table.tsv filtered-table.tsv
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_AMPLISEQ:AMPLISEQ:FILTER_STATS":
      python: $(python --version 2>&1 | sed 's/Python //g')
      pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)")
  END_VERSIONS

Command exit status:
  125

Command output:
  (empty)

Command error:
  Unable to find image 'quay.io/biocontainers/pandas:1.1.5' locally
  docker: Error response from daemon: received unexpected HTTP status: 504 Gateway Time-out.
  See 'docker run --help'.

Work dir:
  /home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/work/ac/26283410bc1dc664cbb78a453337f2

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line

 -- Check '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/meta/nextflow.log' file for details
ERROR ~ Unexpected error [NullPointerException]

 -- Check script './subworkflows/local/utils_nfcore_ampliseq_pipeline/../../nf-core/utils_nfcore_pipeline/main.nf' at line: 97 or see '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/meta/nextflow.log' file for more details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/meta/nextflow.log' file for details
ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting

 -- Check '/home/runner/work/ampliseq/ampliseq/.nf-test/tests/c619acfe94bd1795b1ae0a6ea219cf97/meta/nextflow.log' file for details
Nextflow stderr:

Nextflow 24.10.0 is available - Please consider updating your version to it