Skip to content

Commit

Permalink
Make prettier happy
Browse files Browse the repository at this point in the history
  • Loading branch information
JoseEspinosa committed Jun 12, 2023
1 parent dd41166 commit 837ee95
Showing 1 changed file with 41 additions and 135 deletions.
176 changes: 41 additions & 135 deletions modules.json
Original file line number Diff line number Diff line change
Expand Up @@ -8,252 +8,172 @@
"ataqv/ataqv": {
"branch": "master",
"git_sha": "11c7e5b3073845889060c793786bf3177275d62e",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"ataqv/mkarv": {
"branch": "master",
"git_sha": "11c7e5b3073845889060c793786bf3177275d62e",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": [
"fastq_align_bowtie2",
"modules"
]
"installed_by": ["fastq_align_bowtie2", "modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bwa/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"bwa/mem": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": [
"fastq_align_bwa",
"modules"
]
"installed_by": ["fastq_align_bwa", "modules"]
},
"chromap/chromap": {
"branch": "master",
"git_sha": "603ecbd9f45300c9788f197d2a15a005685b4220",
"installed_by": [
"modules",
"fastq_align_chromap"
]
"installed_by": ["modules", "fastq_align_chromap"]
},
"chromap/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"deeptools/computematrix": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"deeptools/plotfingerprint": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"deeptools/plotheatmap": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"deeptools/plotprofile": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"fastq_fastqc_umitools_trimgalore",
"modules"
]
"installed_by": ["fastq_fastqc_umitools_trimgalore", "modules"]
},
"gffread": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "5c460c5a4736974abde2843294f35307ee2b0e5e",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"homer/annotatepeaks": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"khmer/uniquekmers": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"macs2/callpeak": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"bam_markduplicates_picard",
"modules"
]
"installed_by": ["bam_markduplicates_picard", "modules"]
},
"picard/mergesamfiles": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"bam_stats_samtools",
"modules"
]
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"bam_stats_samtools",
"modules"
]
"installed_by": ["bam_stats_samtools", "modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"bam_sort_stats_samtools",
"bam_markduplicates_picard",
"modules"
]
"installed_by": ["bam_sort_stats_samtools", "bam_markduplicates_picard", "modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"bam_sort_stats_samtools",
"modules"
]
"installed_by": ["bam_sort_stats_samtools", "modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"bam_stats_samtools",
"modules"
]
"installed_by": ["bam_stats_samtools", "modules"]
},
"subread/featurecounts": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"trimgalore": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"fastq_fastqc_umitools_trimgalore",
"modules"
]
"installed_by": ["fastq_fastqc_umitools_trimgalore", "modules"]
},
"ucsc/bedgraphtobigwig": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
},
"umitools/extract": {
"branch": "master",
"git_sha": "911696ea0b62df80e900ef244d7867d177971f73",
"installed_by": [
"fastq_fastqc_umitools_trimgalore"
]
"installed_by": ["fastq_fastqc_umitools_trimgalore"]
},
"untar": {
"branch": "master",
"git_sha": "5c460c5a4736974abde2843294f35307ee2b0e5e",
"installed_by": [
"modules"
]
"installed_by": ["modules"]
}
}
},
Expand All @@ -262,9 +182,7 @@
"bam_markduplicates_picard": {
"branch": "master",
"git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"bam_sort_stats_samtools": {
"branch": "master",
Expand All @@ -279,42 +197,30 @@
"bam_stats_samtools": {
"branch": "master",
"git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
"installed_by": [
"bam_sort_stats_samtools",
"subworkflows",
"bam_markduplicates_picard"
]
"installed_by": ["bam_sort_stats_samtools", "subworkflows", "bam_markduplicates_picard"]
},
"fastq_align_bowtie2": {
"branch": "master",
"git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"fastq_align_bwa": {
"branch": "master",
"git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"fastq_align_chromap": {
"branch": "master",
"git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
},
"fastq_fastqc_umitools_trimgalore": {
"branch": "master",
"git_sha": "a9784afdd5dcda23b84e64db75dc591065d64653",
"installed_by": [
"subworkflows"
]
"installed_by": ["subworkflows"]
}
}
}
}
}
}
}

0 comments on commit 837ee95

Please sign in to comment.