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Merge branch 'explicit_rep' of https://github.com/JoseEspinosa/nf-cor…
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…e-chipseq into explicit_rep
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JoseEspinosa committed Jun 22, 2023
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Expand Up @@ -16,7 +16,7 @@ You will need to create a samplesheet with information about the samples you wou

The `sample` identifier should be identical when you have multiple replicates from the same experimental group, just increment the `replicate` identifier appropriately. The first replicate value for any given experimental group must be 1.

The `antibody` column is required to separate the downstream consensus peak merging for different antibodies. Its not advisable to generate a consensus peak set across different antibodies especially if their binding patterns are inherently different e.g. narrow transcription factors and broad histone marks.
The `antibody` column is required to separate the downstream consensus peak merging for different antibodies. It is not advisable to generate a consensus peak set across different antibodies especially if their binding patterns are inherently different e.g. narrow transcription factors and broad histone marks.

The `control` column should be the `sample` identifier for the controls for any given IP. This column together with the `control_replicate` column will set the corresponding control for each of the samples in the table.

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