Limma mixed bug fix

nf-core · Oct 1, 2024 · d0197a7 · d0197a7
1 parent a701082
commit d0197a7
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/conf/modules.config b/conf/modules.config
@@ -440,6 +440,7 @@ process {
                 pattern: '*.html'
             ]
         ]
+        memory = { check_max( 12.GB * task.attempt, 'memory'  ) }
     }
 
     withName: MAKE_REPORT_BUNDLE {

diff --git a/workflows/differentialabundance.nf b/workflows/differentialabundance.nf
@@ -345,7 +345,7 @@ workflow DIFFERENTIALABUNDANCE {
         (params.study_type == 'rnaseq' && params.differential_use_limma)){
 
         if (params.limma_analysis_type == 'mixedmodel') {
-            ch_contrasts_limma = ch_contrasts.map{ row -> [row[0][0], row[0]] }
+            ch_contrasts_limma = ch_contrasts.map{ row -> [row[0].id, row[0]] }
             .groupTuple()
             .map{
                 contrast = it[1][0]