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Add log2_assays docu to nextflow_schema after shiny fix #153

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WackerO opened this issue Aug 24, 2023 · 3 comments
Open

Add log2_assays docu to nextflow_schema after shiny fix #153

WackerO opened this issue Aug 24, 2023 · 3 comments
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enhancement New feature or request

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@WackerO
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WackerO commented Aug 24, 2023

Description of feature

Plot_exploratory currently does not accept --log2_assays [assay1,assay2] because of a missing call to prettify so I omitted the respective line from nextflow_schema.config; when that is fixed, add
list of assay names enclosed by square brackets, e.g. '[raw,normalised]'; or list

@WackerO WackerO added the enhancement New feature or request label Aug 24, 2023
@WackerO WackerO self-assigned this Aug 24, 2023
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Could you expand on what you mean by 'a missing call to prettify' @WackerO? What needs to change?

@WackerO
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WackerO commented Oct 16, 2023

Ah that is not a problem anymore, solved by dealing with the [] in modules.config instead of in the R code. Will add this to the nextflow_schema in my next PR I think

@WackerO WackerO mentioned this issue Nov 30, 2023
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WackerO commented Jan 15, 2024

To follow up, it was still an issue, but this is solved whenever the next shinyngs release and update is done.

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