Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Support for third UMI read #37

Closed
wants to merge 8 commits into from
Closed

Support for third UMI read #37

wants to merge 8 commits into from

Commits on Nov 2, 2022

  1. Added support for third UMI fastq file

    Adam Talbot committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    528ae35 View commit details
    Browse the repository at this point in the history

  2. Better handling of UMI Fastq existing

    Adam Talbot committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    3115c32 View commit details
    Browse the repository at this point in the history

  3. bugfix: BWA index correctly interpreted when .64 suffix is on files

    Adam Talbot committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    0951eb2 View commit details
    Browse the repository at this point in the history

  4. Software versions exported correctly via ch_versions channel

    Adam Talbot committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    f510bc2 View commit details
    Browse the repository at this point in the history

  5. Raise error when UMI FASTQ file and duplex mode are used together

    Adam Talbot committed Nov 2, 2022
    Configuration menu
    Copy the full SHA
    f672538 View commit details
    Browse the repository at this point in the history

Commits on May 15, 2024

  1. Merge branch 'dev' into third_umi_read

    @adamrtalbot
    adamrtalbot committed May 15, 2024
    Configuration menu
    Copy the full SHA
    0a4172a View commit details
    Browse the repository at this point in the history

  2. Support additonal FASTQ sequence designed for UMI file 

    Changes:
 - Parse input subworkflow to support 3rd FASTQ in addition to R1 and R2
 - Checks number of FASTQ files matches the number of read structures
    @adamrtalbot
    adamrtalbot committed May 15, 2024
    Configuration menu
    Copy the full SHA
    d3777d7 View commit details
    Browse the repository at this point in the history

  3. Drop extra view statement

    @adamrtalbot
    adamrtalbot committed May 15, 2024
    Configuration menu
    Copy the full SHA
    7b35470 View commit details
    Browse the repository at this point in the history