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Fix for NFCORE_MAG:MAG:CAT_SUMMARY input file name collision #489

Merged
merged 38 commits into from
Nov 3, 2023
Merged

Fix for NFCORE_MAG:MAG:CAT_SUMMARY input file name collision #489

merged 38 commits into from
Nov 3, 2023

Commits on Aug 25, 2023

  1. fix: tracking of pre-processing in meta to handle downstream handling

    @maxibor
    maxibor committed Aug 25, 2023
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Commits on Aug 28, 2023

  1. update gtdb-tk version

    @maxibor
    maxibor committed Aug 28, 2023
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  2. update CAT

    @maxibor
    maxibor committed Aug 28, 2023
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  3. cleanup: remove dump debugging

    @maxibor
    maxibor committed Aug 28, 2023
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  4. feat: check named results also includes refinement info

    @maxibor
    maxibor committed Aug 28, 2023
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  5. cleanup: remove dumps

    @maxibor
    maxibor committed Aug 28, 2023
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  6. Merge branch 'custom' into custom2

    @maxibor
    maxibor committed Aug 28, 2023
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Commits on Aug 30, 2023

  1. feat: update gtdb-tk to 2.3.2

    @maxibor
    maxibor committed Aug 30, 2023
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Commits on Sep 1, 2023

  1. doc: update output filenames

    @maxibor
    maxibor committed Sep 1, 2023
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Commits on Sep 7, 2023

  1. update GTDB-Tk module to 2.3.2

    @maxibor
    maxibor committed Sep 7, 2023
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  2. Merge branch 'custom2' of github.com:maxibor/mag into custom

    @maxibor
    maxibor committed Sep 7, 2023
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  3. Merge branch 'custom' of github.com:maxibor/mag into custom

    @maxibor
    maxibor committed Sep 7, 2023
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  4. update GTDB-TK prefix

    @maxibor
    maxibor committed Sep 7, 2023
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Commits on Sep 11, 2023

  1. tmp: add dump for depth

    @maxibor
    maxibor committed Sep 11, 2023
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Commits on Sep 20, 2023

  1. update CAT

    @maxibor
    maxibor committed Sep 20, 2023
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  2. dump depth

    @maxibor
    maxibor committed Sep 20, 2023
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  3. remove duplicate bins

    @maxibor
    maxibor committed Sep 20, 2023
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  4. fix: add depth

    @maxibor
    maxibor committed Sep 20, 2023
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Commits on Sep 22, 2023

  1. unique busco bins

    @maxibor
    maxibor committed Sep 22, 2023
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  2. log: add busco dump

    @maxibor
    maxibor committed Sep 22, 2023
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  3. fix: add missing config entries for concoct

    @maxibor
    maxibor committed Sep 22, 2023
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  4. eukaryote bins are not sent to refined channel

    @maxibor
    maxibor committed Sep 22, 2023
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  5. debug: add dump for bin metrics

    @maxibor
    maxibor committed Sep 22, 2023
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  6. debug: ch_filtered_bins -> bins

    @maxibor
    maxibor committed Sep 22, 2023
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  7. debug: add groupTuple

    @maxibor
    maxibor committed Sep 22, 2023
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  8. debug: flatten bins

    @maxibor
    maxibor committed Sep 22, 2023
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  9. debug: add bin_unbins dump

    @maxibor
    maxibor committed Sep 22, 2023
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  10. debug: new combine for depths to avoid duplicated entries

    @maxibor
    maxibor committed Sep 22, 2023
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  11. debug: add depths dump

    @maxibor
    maxibor committed Sep 22, 2023
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Commits on Oct 10, 2023

  1. pin nf-validation

    @maxibor
    maxibor committed Oct 10, 2023
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Commits on Oct 16, 2023

  1. Merge remote-tracking branch 'upstream/dev' into custom2

    @maxibor
    maxibor committed Oct 16, 2023
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  2. dev: both is an accepted value

    @maxibor
    maxibor committed Oct 16, 2023
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  3. dev: reactivate bin mixing

    @maxibor
    maxibor committed Oct 16, 2023
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Commits on Oct 30, 2023

  1. [automated] Fix linting with Prettier

    @nf-core-bot
    nf-core-bot committed Oct 30, 2023
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Commits on Nov 1, 2023

  1. Update CHANGELOG.md

    @jfy133
    jfy133 authored Nov 1, 2023
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  2. Update CHANGELOG.md

    @jfy133
    jfy133 authored Nov 1, 2023
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  3. Update subworkflows/local/depths.nf

    @jfy133
    jfy133 authored Nov 1, 2023
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Commits on Nov 2, 2023

  1. Apply suggestions from code review

    @jfy133
    jfy133 authored Nov 2, 2023
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