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add nf-test to gatk4/bedtointervallist - #3936 #7941

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add nf-test to gatk4/bedtointervallist - #3936

add nf-test to gatk4/bedtointervallist - #3936 #7941

Triggered via pull request March 19, 2024 13:28
@vlebarsvlebars
opened #5251
vlebars:gatk4_bedtointervallist
Status Success
Total duration 52m 30s
Artifacts –

test.yml

on: pull_request
nf-test-changes
7s
nf-test-changes
pytest-changes
5s
pytest-changes
prettier
45s
prettier
editorconfig
10s
editorconfig
pre-commit
16s
pre-commit
Matrix: nf-test
Matrix: nf-core-lint
Matrix: pytest
confirm-pass
0s
confirm-pass
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16 warnings
pytest-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test-changes
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: mirpedrol/paths-filter@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
pre-commit
The `python-version` input is not set. The version of Python currently in `PATH` will be used.
nf-test (minimap2/index, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (wisecondorx/predict, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (wisecondorx/gender, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (wisecondorx/convert, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (ale, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (wisecondorx/newref, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (subworkflows/fastq_align_bowtie2, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (gatk4/bedtointervallist, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (gatk4/splitncigarreads, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (subworkflows/fastq_align_dna, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (subworkflows/fastq_fastqc_umitools_fastp, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (fastp, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
nf-test (bowtie2/align, singularity)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: eWaterCycle/setup-apptainer@main. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.