debug: Print variables

nf-core · Jul 3, 2024 · a6b3209 · a6b3209
1 parent a6b9a76
commit a6b3209
Showing 1 changed file with 3 additions and 0 deletions.
diff --git a/modules/nf-core/sentieon/bwamem/main.nf b/modules/nf-core/sentieon/bwamem/main.nf
@@ -61,6 +61,9 @@ process SENTIEON_BWAMEM {
     # Only going to happen in GitHub actions or in AWSMegatests
     if  [ "\${SENTIEON_AUTH_MECH}" ] && [ "\${SENTIEON_AUTH_DATA}" ]; then
         echo "If sentieon_auth_mech_base64 and sentieon_auth_data_base64 are non-empty strings, then Sentieon is mostly likely being run with some test-license."
+        echo "auth_mech: \${SENTIEON_AUTH_MECH}"
+        echo "auth_data: \${SENTIEON_AUTH_DATA}"
+        echo "license: \${SENTIEON_LICENSE}"
     fi
 
     $fix_ld_library_path