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Bump shinyngs modules #3323

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Apr 26, 2023
Merged

Bump shinyngs modules #3323

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6 changes: 3 additions & 3 deletions modules/nf-core/shinyngs/app/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -13,10 +13,10 @@ process SHINYNGS_APP {
//
// Those values must then be set in your Nextflow secrets.

conda "bioconda::r-shinyngs=1.7.1"
conda "bioconda::r-shinyngs=1.7.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.1--r42hdfd78af_1':
'quay.io/biocontainers/r-shinyngs:1.7.1--r42hdfd78af_1' }"
'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.2--r42hdfd78af_0':
'quay.io/biocontainers/r-shinyngs:1.7.2--r42hdfd78af_0' }"

input:
tuple val(meta), path(sample), path(feature_meta), path(assay_files) // Experiment-level info
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6 changes: 3 additions & 3 deletions modules/nf-core/shinyngs/staticdifferential/main.nf
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Expand Up @@ -2,10 +2,10 @@ process SHINYNGS_STATICDIFFERENTIAL {
tag "$meta.id"
label 'process_single'

conda "bioconda::r-shinyngs=1.7.1"
conda "bioconda::r-shinyngs=1.7.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.1--r42hdfd78af_1':
'quay.io/biocontainers/r-shinyngs:1.7.1--r42hdfd78af_1' }"
'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.2--r42hdfd78af_0':
'quay.io/biocontainers/r-shinyngs:1.7.2--r42hdfd78af_0' }"

input:
tuple val(meta), path(differential_result) // Differential info: contrast and differential stats
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6 changes: 3 additions & 3 deletions modules/nf-core/shinyngs/staticexploratory/main.nf
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Expand Up @@ -2,10 +2,10 @@ process SHINYNGS_STATICEXPLORATORY {
tag "$meta.id"
label 'process_single'

conda "bioconda::r-shinyngs=1.7.1"
conda "bioconda::r-shinyngs=1.7.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.1--r42hdfd78af_1':
'quay.io/biocontainers/r-shinyngs:1.7.1--r42hdfd78af_1' }"
'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.2--r42hdfd78af_0':
'quay.io/biocontainers/r-shinyngs:1.7.2--r42hdfd78af_0' }"

input:
tuple val(meta), path(sample), path(feature_meta), path(assay_files)
Expand Down
6 changes: 3 additions & 3 deletions modules/nf-core/shinyngs/validatefomcomponents/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,10 @@ process SHINYNGS_VALIDATEFOMCOMPONENTS {
tag "$sample"
label 'process_single'

conda "bioconda::r-shinyngs=1.7.1"
conda "bioconda::r-shinyngs=1.7.2"
container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.1--r42hdfd78af_1':
'quay.io/biocontainers/r-shinyngs:1.7.1--r42hdfd78af_1' }"
'https://depot.galaxyproject.org/singularity/r-shinyngs:1.7.2--r42hdfd78af_0':
'quay.io/biocontainers/r-shinyngs:1.7.2--r42hdfd78af_0' }"

input:
tuple val(meta), path(sample), path(assay_files)
Expand Down