Merge branch 'dev' into svdb_query_schema

CHANGELOG.md

@@ -39,6 +39,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Adds a new parameter skip_mt_annotation which can be used to turn on/off annotation and ranking for mitochondrial SNVs [#419](https://github.com/nf-core/raredisease/pull/419)
 - Changed the name of the parameter from `skip_cnv_calling` to `skip_germlinecnvcaller` [#435](https://github.com/nf-core/raredisease/pull/435)
 - Check SVDB query input files for existence and correct format [#476](https://github.com/nf-core/raredisease/pull/476)
+- Change hardcoded platform value to params.platform in align_MT.config [#475](https://github.com/nf-core/raredisease/pull/475)
 
 ### `Fixed`
 

conf/modules/align_MT.config

@@ -42,7 +42,7 @@ process {
         ext.args = { [
             "--VALIDATION_STRINGENCY LENIENT",
             "--RGLB lib",
-            "--RGPL ILLUMINA",
+            "--RGPL ${params.platform}",
             "--RGPU barcode",
             "--RGSM ${meta.id}"
         ].join(' ').trim() }