Merge pull request #624 from nf-core/fix-cadd

Fix channel declaration error in the cadd subworkflow
nf-core · Oct 4, 2024 · f49a3bb · f49a3bb
2 parents 33aef2a + 4f26c00
commit f49a3bb
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -18,6 +18,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
+- bcftools annotate declaration in annotate CADD subworkflow [#624](https://github.com/nf-core/raredisease/pull/624)
 - Rhocallviz subworkflow will only be invocated once per sample [#621](https://github.com/nf-core/raredisease/pull/621)
 - Allow for VEP version 112 to be used and set it to default [#617](https://github.com/nf-core/raredisease/pull/617)
 

diff --git a/subworkflows/local/annotation/annotate_cadd.nf b/subworkflows/local/annotation/annotate_cadd.nf
@@ -30,10 +30,9 @@ workflow ANNOTATE_CADD {
         ch_vcf
             .join(CADD.out.tsv)
             .join(TABIX_CADD.out.tbi)
-            .combine(ch_header)
             .set { ch_annotate_in }
 
-        BCFTOOLS_ANNOTATE(ch_annotate_in)
+        BCFTOOLS_ANNOTATE(ch_annotate_in, ch_header)
 
         TABIX_ANNOTATE (BCFTOOLS_ANNOTATE.out.vcf)