Merge pull request #391 from adamrtalbot/fix_gatk4_containers

Correct GATK4 container spec
nf-core · Jul 27, 2023 · f4d5d57 · f4d5d57
2 parents 78b50c1 + de8b2cc
commit f4d5d57
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -15,6 +15,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
+- Invalid GATK4 container which caused incorrect singularity downloads with nf-core download [nf-core/modules #3668](https://github.com/nf-core/modules/issues/3668)
+
 ## v1.1.1 - Abu (Patch) [2023-07-26]
 
 ### `Fixed`

diff --git a/modules.json b/modules.json
@@ -117,7 +117,7 @@
                     },
                     "gatk4/determinegermlinecontigploidy": {
                         "branch": "master",
-                        "git_sha": "d25bf48327e86a7f737047a57ec264b90e22ce3d",
+                        "git_sha": "c6257c167fb88d18f3c2797e1af331d28f7b8ae7",
                         "installed_by": ["modules"]
                     },
                     "gatk4/filtermutectcalls": {
@@ -152,7 +152,7 @@
                     },
                     "gatk4/postprocessgermlinecnvcalls": {
                         "branch": "master",
-                        "git_sha": "39ca55cc30514169f8420162bafe4ecf673f4b9a",
+                        "git_sha": "c6257c167fb88d18f3c2797e1af331d28f7b8ae7",
                         "installed_by": ["modules"]
                     },
                     "gatk4/preprocessintervals": {

diff --git a/modules/nf-core/gatk4/determinegermlinecontigploidy/main.nf b/modules/nf-core/gatk4/determinegermlinecontigploidy/main.nf
diff --git a/modules/nf-core/gatk4/postprocessgermlinecnvcalls/main.nf b/modules/nf-core/gatk4/postprocessgermlinecnvcalls/main.nf