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Reduce resource usage for sort process in bedtools/genomecov #1350

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merged 4 commits into from
Aug 7, 2024
Merged

Reduce resource usage for sort process in bedtools/genomecov #1350

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61def16
Bump resource bucket for genomecov
pinin4fjords Aug 7, 2024
1e611b1
Revert "Bump resource bucket for genomecov"
pinin4fjords Aug 7, 2024
0af6da7
Update bedtools/genomecov for lower-resource sort
pinin4fjords Aug 7, 2024
add81e8
Update changelog
pinin4fjords Aug 7, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -106,6 +106,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
- [PR #1341](https://github.com/nf-core/rnaseq/pull/1341) - Add rename in the MultiQC report for samples without techreps
- [PR #1342](https://github.com/nf-core/rnaseq/pull/1342) - Factor out preprocessing
- [PR #1345](https://github.com/nf-core/rnaseq/pull/1345) - Fix preprocessing call
- [PR #1350](https://github.com/nf-core/rnaseq/pull/1350) - Reduce resource usage for sort process in bedtools/genomecov

### Parameters

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2 changes: 1 addition & 1 deletion modules.json
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Expand Up @@ -12,7 +12,7 @@
},
"bedtools/genomecov": {
"branch": "master",
"git_sha": "81b90194ce9911dbd55bba2c65c6919f6677abc4",
"git_sha": "9ba6b02bbcb322ff4265cc51fca0ee5d8420b929",
"installed_by": ["modules"]
},
"cat/fastq": {
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11 changes: 7 additions & 4 deletions modules/nf-core/bedtools/genomecov/main.nf
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83 changes: 70 additions & 13 deletions modules/nf-core/bedtools/genomecov/tests/main.nf.test
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131 changes: 118 additions & 13 deletions modules/nf-core/bedtools/genomecov/tests/main.nf.test.snap
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