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Fix containsKey if no genome is used #60

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Aug 17, 2018
Merged

Fix containsKey if no genome is used #60

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4 changes: 2 additions & 2 deletions main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -95,8 +95,8 @@ if (params.help){
}

// Check if genome exists in the config file
if (!params.genomes.containsKey(params.genome) && params.genome) {
exit 1, "The provided genome '${params.genome}' is not available in the iGenomes file. Currently the available genomes are ${params.genomes.keySet().join(", ")}"
if (params.genomes && params.genome && !params.genomes.containsKey(params.genome)) {
exit 1, "The provided genome '${params.genome}' is not available in the iGenomes file. Currently the available genomes are ${params.genomes.keySet().join(", ")}"
}

// Configurable variables
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